STRINGSTRING
Namu_0029 Namu_0029 Namu_0030 Namu_0030 Namu_0032 Namu_0032 Namu_0033 Namu_0033 Namu_0034 Namu_0034
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Namu_0029PFAM: GPR1/FUN34/yaaH family protein; KEGG: apj:APJL_2062 inner membrane protein. (223 aa)
Namu_0030PFAM: AMP-dependent synthetase and ligase; KEGG: sil:SPO0677 acyl-CoA synthetase. (541 aa)
Namu_0032Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: sbp:Sbal223_0569 transcriptional regulator, MarR family. (201 aa)
Namu_0033TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: bur:Bcep18194_B1271 EmrB/QacA family drug resistance transporter. (541 aa)
Namu_0034PFAM: transposase IS116/IS110/IS902 family protein; KEGG: mch:Mchl_5540 transposase IS116/IS110/IS902 family protein. (348 aa)
Your Current Organism:
Nakamurella multipartita
NCBI taxonomy Id: 479431
Other names: N. multipartita DSM 44233, Nakamurella multipartita DSM 44233, Nakamurella multipartita str. DSM 44233, Nakamurella multipartita strain DSM 44233
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