STRINGSTRING
Sros_1177 Sros_1177 Sros_1440 Sros_1440 Sros_5114 Sros_5114 Sros_7117 Sros_7117 Sros_7118 Sros_7118 Sros_7120 Sros_7120
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Sros_1177KEGG: scl:sce6892 hypothetical protein. (474 aa)
Sros_1440KEGG: bph:Bphy_5923 pyridoxal-dependent decarboxylase. (474 aa)
Sros_5114KEGG: mrd:Mrad2831_2878 aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (436 aa)
Sros_7117KEGG: abc:ACICU_00145 putative NAD dependent epimerase/dehydratase family protein. (580 aa)
Sros_7118Putative transcriptional regulator, TetR family; KEGG: mlo:mlr8196 transcriptional regulator. (186 aa)
Sros_7120KEGG: spe:Spro_3049 pyridoxal-dependent decarboxylase. (466 aa)
Your Current Organism:
Streptosporangium roseum
NCBI taxonomy Id: 479432
Other names: S. roseum DSM 43021, Streptosporangium roseum DSM 43021, Streptosporangium roseum str. DSM 43021, Streptosporangium roseum strain DSM 43021
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