STRINGSTRING
mfd mfd Sros_0368 Sros_0368 Sros_0493 Sros_0493 Sros_2211 Sros_2211 Sros_5632 Sros_5632 Sros_5856 Sros_5856 Sros_5980 Sros_5980 Sros_6200 Sros_6200 Sros_6889 Sros_6889 Sros_6926 Sros_6926 Sros_7074 Sros_7074 Sros_7832 Sros_7832 Sros_7833 Sros_7833 Sros_7838 Sros_7838 Sros_8000 Sros_8000 Sros_8393 Sros_8393
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
mfdTranscription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily. (1204 aa)
Sros_0368KEGG: scl:sce0700 ATP-independent RNA helicase; Belongs to the DEAD box helicase family. (561 aa)
Sros_0493KEGG: dvl:Dvul_2723 DEAD/DEAH box helicase domain- containing protein. (815 aa)
Sros_2211KEGG: eca:ECA1589 putative ATP-dependent helicase Lhr. (1620 aa)
Sros_5632KEGG: sus:Acid_0740 ATP-dependent DNA helicase RecQ. (545 aa)
Sros_5856KEGG: probable nuclear exosomal RNA helicase MTR4; K01529. (909 aa)
Sros_5980KEGG: xau:Xaut_3204 DEAD/DEAH box helicase domain- containing protein. (571 aa)
Sros_6200KEGG: scl:sce4364 putative ATP-dependent helicase. (830 aa)
Sros_6889KEGG: elf:LF82_1032 ATP-dependent RNA helicase HrpA. (1290 aa)
Sros_6926KEGG: bav:BAV2781 ATP-dependent DNA helicase. (628 aa)
Sros_7074KEGG: maq:Maqu_0559 ATP-dependent DNA helicase RecQ. (689 aa)
Sros_7832KEGG: mgm:Mmc1_2016 helicase domain protein. (941 aa)
Sros_7833KEGG: mgm:Mmc1_2015 DEAD/DEAH box helicase domain protein. (1723 aa)
Sros_7838KEGG: hch:HCH_03463 Lhr-like helicase. (694 aa)
Sros_8000KEGG: tgr:Tgr7_3183 ATP-dependent DNA helicase RecG. (723 aa)
Sros_8393Hypothetical protein; KEGG: proteophosphoglycan ppg4; Belongs to the DEAD box helicase family. (697 aa)
Your Current Organism:
Streptosporangium roseum
NCBI taxonomy Id: 479432
Other names: S. roseum DSM 43021, Streptosporangium roseum DSM 43021, Streptosporangium roseum str. DSM 43021, Streptosporangium roseum strain DSM 43021
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