STRINGSTRING
Sros_0368 Sros_0368 rho rho dnaK dnaK groL groL rho-2 rho-2 pnp pnp rnj rnj rny rny Sros_2934 Sros_2934 dnaK-2 dnaK-2 groL-2 groL-2 Sros_5632 Sros_5632 Sros_6926 Sros_6926 Sros_7074 Sros_7074 Sros_7272 Sros_7272 eno eno ppk ppk groL-3 groL-3 Sros_9369 Sros_9369
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Sros_0368KEGG: scl:sce0700 ATP-independent RNA helicase; Belongs to the DEAD box helicase family. (561 aa)
rhoTranscription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template. (383 aa)
dnaKClass I heat-shock protein (chaperonin); Acts as a chaperone; Belongs to the heat shock protein 70 family. (623 aa)
groLChaperonin GroEL; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions. (541 aa)
rho-2Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template. (704 aa)
pnpPolyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. (773 aa)
rnjConserved hypothetical protein; An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay. (561 aa)
rny2',3'-cyclic-nucleotide 2'-phosphodiesterase; Endoribonuclease that initiates mRNA decay. (502 aa)
Sros_2934KEGG: tcx:Tcr_1833 hypothetical protein. (318 aa)
dnaK-2Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. (633 aa)
groL-2Chaperonin GroEL; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions. (541 aa)
Sros_5632KEGG: sus:Acid_0740 ATP-dependent DNA helicase RecQ. (545 aa)
Sros_6926KEGG: bav:BAV2781 ATP-dependent DNA helicase. (628 aa)
Sros_7074KEGG: maq:Maqu_0559 ATP-dependent DNA helicase RecQ. (689 aa)
Sros_7272KEGG: gme:Gmet_3192 ribonuclease G. (922 aa)
enoPhosphopyruvate hydratase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family. (425 aa)
ppkPolyphosphate kinase; Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP). Belongs to the polyphosphate kinase 1 (PPK1) family. (687 aa)
groL-3Chaperonin GroEL; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions. (541 aa)
Sros_9369KEGG: hypothetical protein; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. (479 aa)
Your Current Organism:
Streptosporangium roseum
NCBI taxonomy Id: 479432
Other names: S. roseum DSM 43021, Streptosporangium roseum DSM 43021, Streptosporangium roseum str. DSM 43021, Streptosporangium roseum strain DSM 43021
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