STRINGSTRING
Sthe_2317 Sthe_2317 Sthe_3489 Sthe_3489 Sthe_3293 Sthe_3293 Sthe_3255 Sthe_3255 Sthe_3237 Sthe_3237 Sthe_3057 Sthe_3057 Sthe_2835 Sthe_2835 Sthe_2834 Sthe_2834 Sthe_2520 Sthe_2520 Sthe_2488 Sthe_2488 Sthe_2242 Sthe_2242 dnaX dnaX gatA gatA Sthe_1845 Sthe_1845 Sthe_1831 Sthe_1831 Sthe_1822 Sthe_1822 Sthe_1396 Sthe_1396 clpX clpX Sthe_1312 Sthe_1312 Sthe_1222 Sthe_1222 Sthe_1214 Sthe_1214 rpoA rpoA rpoC rpoC rpoB rpoB Sthe_0907 Sthe_0907 Sthe_0879 Sthe_0879 Sthe_0875 Sthe_0875 xseA xseA xseB xseB Sthe_0659 Sthe_0659 recD2 recD2 Sthe_0516 Sthe_0516 dnaG dnaG hslV hslV Sthe_0312 Sthe_0312
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Sthe_2317PFAM: Amidase; KEGG: sus:Acid_7160 amidase. (467 aa)
Sthe_3489PFAM: Amidase; KEGG: reu:Reut_B5142 amidase. (506 aa)
Sthe_3293PFAM: Amidase; KEGG: mxa:MXAN_3566 amidase. (542 aa)
Sthe_3255PFAM: Amidase; KEGG: bbr:BB4983 amidase; Belongs to the amidase family. (474 aa)
Sthe_3237PFAM: Amidase; KEGG: aeh:Mlg_2453 amidase. (539 aa)
Sthe_3057PFAM: RES domain protein; KEGG: scl:sce3521 hypothetical protein. (204 aa)
Sthe_2835KEGG: pca:Pcar_0796 hypothetical protein. (672 aa)
Sthe_2834PFAM: zinc finger CHC2-family protein; SMART: zinc finger CHC2-family protein; KEGG: hha:Hhal_1100 DNA primase. (214 aa)
Sthe_2520PFAM: Amidase; KEGG: bpt:Bpet1417 glutamyl-tRNA(Gln) amidotransferase subunit A; Belongs to the amidase family. (472 aa)
Sthe_2488PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; KEGG: reh:PHG064 putative [NiFe] hydrogenase small subunit. (355 aa)
Sthe_2242PFAM: zinc finger CHC2-family protein; SMART: zinc finger CHC2-family protein; KEGG: rba:RB6344 DNA primase. (198 aa)
dnaXDNA polymerase III, subunits gamma and tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. (589 aa)
gatAglutamyl-tRNA(Gln) amidotransferase, A subunit; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu- tRNA(Gln). (497 aa)
Sthe_1845TIGRFAM: RNA polymerase sigma-54 factor, RpoN; PFAM: sigma-54 DNA-binding domain protein; sigma-54 factor core-binding region; KEGG: hau:Haur_0125 RNA polymerase, sigma 54 subunit, RpoN. (472 aa)
Sthe_1831PFAM: Amidase; KEGG: sma:SAV_7269 amidase. (466 aa)
Sthe_1822PFAM: Amidase; KEGG: cau:Caur_1377 amidase. (547 aa)
Sthe_1396KEGG: rrs:RoseRS_0006 hypothetical protein. (267 aa)
clpXSigma 54 interacting domain protein; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP. (419 aa)
Sthe_1312DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] (379 aa)
Sthe_1222PFAM: Amidase; KEGG: afu:AF1954 Glu-tRNA amidotransferase, subunit A (GatA-1); Belongs to the amidase family. (514 aa)
Sthe_1214TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III delta; KEGG: cau:Caur_2419 DNA polymerase III, delta subunit. (340 aa)
rpoADNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (340 aa)
rpoCDNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1479 aa)
rpoBDNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1159 aa)
Sthe_0907PFAM: Amidase; KEGG: bra:BRADO4401 putative amidase; Belongs to the amidase family. (469 aa)
Sthe_0879PFAM: Gas vesicle synthesis GvpLGvpF; KEGG: pth:PTH_0426 hypothetical protein. (252 aa)
Sthe_0875PFAM: Gas vesicle synthesis GvpLGvpF; KEGG: gur:Gura_2834 gas vesicle synthesis GvpLGvpF. (257 aa)
xseAExodeoxyribonuclease VII, large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family. (414 aa)
xseBExodeoxyribonuclease VII, small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family. (112 aa)
Sthe_0659TIGRFAM: DNA polymerase III, delta prime subunit; KEGG: rrs:RoseRS_3588 DNA polymerase III, delta prime subunit. (346 aa)
recD2Helicase, RecD/TraA family; DNA-dependent ATPase and ATP-dependent 5'-3' DNA helicase. Has no activity on blunt DNA or DNA with 3'-overhangs, requires at least 10 bases of 5'-ssDNA for helicase activity; Belongs to the RecD family. RecD-like subfamily. (737 aa)
Sthe_0516PFAM: DNA polymerase B region; DNA polymerase B exonuclease; SMART: DNA-directed DNA polymerase B; KEGG: gsu:GSU3245 DNA polymerase II, putative. (730 aa)
dnaGDNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. (615 aa)
hslV20S proteasome A and B subunits; Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery. (190 aa)
Sthe_0312Heat shock protein HslVU, ATPase subunit HslU; ATPase subunit of a proteasome-like degradation complex; this subunit has chaperone activity. (485 aa)
Your Current Organism:
Sphaerobacter thermophilus
NCBI taxonomy Id: 479434
Other names: S. thermophilus DSM 20745, Sphaerobacter thermophilus DSM 20745, Sphaerobacter thermophilus str. DSM 20745, Sphaerobacter thermophilus strain DSM 20745
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