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| | lysS | TIGRFAM: lysyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; KEGG: cau:Caur_1226 lysyl-tRNA synthetase; Belongs to the class-II aminoacyl-tRNA synthetase family. (513 aa) |
| | Sthe_1073 | KEGG: hau:Haur_2402 DNA-(apurinic or apyrimidinic site) lyase; PFAM: HhH-GPD family protein; SMART: HhH-GPD family protein; iron-sulfur cluster loop. (247 aa) |
| | Sthe_1071 | PFAM: beta-lactamase domain protein; KEGG: fre:Franean1_3962 beta-lactamase domain- containing protein. (267 aa) |
| | truA | tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs. (271 aa) |
| | rpoA | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (340 aa) |
| | rpoC | DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1479 aa) |
| | rpoB | DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1159 aa) |
| | rho | Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template. (417 aa) |
| | dinG | Exonuclease RNase T and DNA polymerase III; 3'-5' exonuclease. (966 aa) |
| | trmD | tRNA (guanine-N1)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family. (243 aa) |
| | rnj-2 | Beta-lactamase domain protein; An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay. (555 aa) |
| | Sthe_0942 | TIGRFAM: phage SPO1 DNA polymerase-related protein; PFAM: Uracil-DNA glycosylase superfamily; KEGG: rca:Rcas_4076 phage SPO1 DNA polymerase- related protein. (202 aa) |
| | ligA | DNA ligase, NAD-dependent; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA. (680 aa) |
| | Sthe_0938 | PFAM: B3/4 domain protein; KEGG: pac:PPA2209 hypothetical protein. (244 aa) |
| | Sthe_0930 | PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicases; helicase domain protein; KEGG: sth:STH1623 ATP-dependent RNA helicase. (779 aa) |
| | recA | recA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. (352 aa) |
| | Sthe_0907 | PFAM: Amidase; KEGG: bra:BRADO4401 putative amidase; Belongs to the amidase family. (469 aa) |
| | Sthe_0903 | PFAM: DEAD/DEAH box helicase domain protein; DSH domain protein; helicase domain protein; SMART: DEAD-like helicases; helicase domain protein; AAA ATPase; KEGG: sgr:SGR_5873 putative ATP-dependent RNA helicase. (962 aa) |
| | ybeY | Protein of unknown function UPF0054; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. (153 aa) |
| | Sthe_0879 | PFAM: Gas vesicle synthesis GvpLGvpF; KEGG: pth:PTH_0426 hypothetical protein. (252 aa) |
| | Sthe_0875 | PFAM: Gas vesicle synthesis GvpLGvpF; KEGG: gur:Gura_2834 gas vesicle synthesis GvpLGvpF. (257 aa) |
| | Sthe_0855 | KEGG: afe:Lferr_2703 PHP domain protein. (169 aa) |
| | Sthe_0850 | KEGG: dsh:Dshi_4166 hypothetical protein. (321 aa) |
| | rsmA | Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. (293 aa) |
| | Sthe_0835 | KEGG: dol:Dole_1164 metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region. (335 aa) |
| | mutL | DNA mismatch repair protein MutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. (578 aa) |
| | mutS-2 | DNA mismatch repair protein MutS; This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity. (893 aa) |
| | uvrB | Excinuclease ABC, B subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...] (664 aa) |
| | xseA | Exodeoxyribonuclease VII, large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family. (414 aa) |
| | xseB | Exodeoxyribonuclease VII, small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family. (112 aa) |
| | mutM | formamidopyrimidine-DNA glycosylase; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates. (278 aa) |
| | Sthe_0773 | KEGG: cja:CJA_1236 site-specific recombinase. (115 aa) |
| | Sthe_0771 | PFAM: UvrD/REP helicase; KEGG: cau:Caur_1305 UvrD/REP helicase. (738 aa) |
| | dtd | D-tyrosyl-tRNA(Tyr) deacylase; An aminoacyl-tRNA editing enzyme that deacylates mischarged D-aminoacyl-tRNAs. Also deacylates mischarged glycyl-tRNA(Ala), protecting cells against glycine mischarging by AlaRS. Acts via tRNA- based rather than protein-based catalysis; rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D- aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl- tRNA entities in vivo and helps enforce protein L-homochirality. Belongs to the DTD family. (149 aa) |
| | rny | RNA binding metal dependent phosphohydrolase; Endoribonuclease that initiates mRNA decay. (510 aa) |
| | selA | L-seryl-tRNA selenium transferase; Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis. (478 aa) |
| | Sthe_0682 | KEGG: dsy:DSY0348 hypothetical protein. (108 aa) |
| | mutS | DNA mismatch repair protein MutS; This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity. (871 aa) |
| | Sthe_0659 | TIGRFAM: DNA polymerase III, delta prime subunit; KEGG: rrs:RoseRS_3588 DNA polymerase III, delta prime subunit. (346 aa) |
| | Sthe_0632 | PFAM: HhH-GPD family protein; SMART: HhH-GPD family protein; KEGG: afe:Lferr_1527 HhH-GPD family protein. (319 aa) |
| | recD2 | Helicase, RecD/TraA family; DNA-dependent ATPase and ATP-dependent 5'-3' DNA helicase. Has no activity on blunt DNA or DNA with 3'-overhangs, requires at least 10 bases of 5'-ssDNA for helicase activity; Belongs to the RecD family. RecD-like subfamily. (737 aa) |
| | Sthe_0501 | Pseudouridine synthase, RluA family; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. (313 aa) |
| | radA | DNA repair protein RadA; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function. (462 aa) |
| | hisS | KEGG: rca:Rcas_0121 histidyl-tRNA synthetase; TIGRFAM: histidyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Anticodon-binding domain protein. (455 aa) |
| | Sthe_0475 | PFAM: transposase IS4 family protein; KEGG: rxy:Rxyl_2488 putative transposase. (307 aa) |
| | rnhB | Ribonuclease H; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. (233 aa) |
| | glyQS | glycyl-tRNA synthetase; Catalyzes the attachment of glycine to tRNA(Gly). Belongs to the class-II aminoacyl-tRNA synthetase family. (469 aa) |
| | xerC | Integrase family protein; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. (306 aa) |
| | Sthe_0458 | KEGG: cur:cur_1297 hypothetical protein. (139 aa) |
| | thrS | TIGRFAM: threonyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Anticodon-binding domain protein; Threonyl/alanyl tRNA synthetase SAD; KEGG: deb:DehaBAV1_0681 Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase; Belongs to the class-II aminoacyl-tRNA synthetase family. (596 aa) |
| | Sthe_0436 | PFAM: pseudouridine synthase; RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein; KEGG: rca:Rcas_0166 pseudouridine synthase; Belongs to the pseudouridine synthase RsuA family. (337 aa) |
| | rph | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. (246 aa) |
| | uvrC | Excinuclease ABC, C subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. (609 aa) |
| | dnaG | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. (615 aa) |
| | topA | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] (769 aa) |
| | Sthe_0350 | PFAM: transposase IS4 family protein; KEGG: rxy:Rxyl_2488 putative transposase. (307 aa) |
| | Sthe_0338 | PFAM: protein of unknown function DUF891; KEGG: pph:Ppha_2124 protein of unknown function DUF891. (119 aa) |
| | Sthe_0337 | TIGRFAM: isoleucyl-tRNA synthetase; KEGG: rxy:Rxyl_2428 isoleucyl-tRNA synthetase. (1060 aa) |
| | rnj | Beta-lactamase domain protein; An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay. (554 aa) |
| | Sthe_0316 | PFAM: Threonyl/alanyl tRNA synthetase SAD; KEGG: rxy:Rxyl_2571 Ala-tRNA(Pro) hydrolase. (247 aa) |
| | Sthe_0314 | TIGRFAM: DNA polymerase LigD, polymerase domain protein; PFAM: DNA primase small subunit; KEGG: swo:Swol_1124 hypothetical protein. (301 aa) |
| | priA | Primosomal protein N; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily. (824 aa) |
| | Sthe_0257 | PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: sgr:SGR_4336 hypothetical protein. (179 aa) |
| | Sthe_0227 | KEGG: msm:MSMEG_1633 DNA polymerase III, alpha subunit, putative; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: DNA polymerase III alpha subunit; PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type; SMART: phosphoesterase PHP domain protein; Belongs to the DNA polymerase type-C family. DnaE2 subfamily. (1095 aa) |
| | Sthe_0180 | Hypothetical protein; KEGG: rrs:RoseRS_0444 transposase, IS4 family protein. (128 aa) |
| | rnpA | Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. (129 aa) |
| | Sthe_0160 | PFAM: transposase IS4 family protein; KEGG: rxy:Rxyl_2488 putative transposase. (272 aa) |
| | Sthe_0159 | KEGG: cau:Caur_1207 superfamily I DNA/RNA helicase. (1448 aa) |
| | Sthe_0123 | KEGG: ace:Acel_2052 cysteinyl-tRNA synthetase-like. (267 aa) |
| | Sthe_0122 | PFAM: methyladenine glycosylase; KEGG: bha:BH1453 hypothetical protein. (169 aa) |
| | Sthe_0117 | PFAM: transposase IS4 family protein; KEGG: rxy:Rxyl_2488 putative transposase. (307 aa) |
| | Sthe_0083 | KEGG: tte:TTE0010 DNA gyrase subunit B; PFAM: DNA topoisomerase type IIA subunit B region 2 domain protein; DNA gyrase subunit B domain protein; ATP- binding region ATPase domain protein; SMART: DNA topoisomerase II; ATP-binding region ATPase domain protein. (674 aa) |
| | Sthe_0082 | KEGG: ava:Ava_1327 transposase IS200. (144 aa) |
| | Sthe_0081 | DNA topoisomerase (ATP-hydrolyzing); KEGG: chy:CHY_2704 DNA gyrase, A subunit; PFAM: DNA gyrase/topoisomerase IV subunit A; DNA gyrase repeat beta-propeller; SMART: DNA gyrase/topoisomerase IV subunit A. (813 aa) |
| | Sthe_0064 | Hypothetical protein; KEGG: rxy:Rxyl_2488 putative transposase. (289 aa) |
| | Sthe_0055 | PFAM: transposase IS4 family protein; KEGG: rxy:Rxyl_2488 putative transposase. (307 aa) |
| | Sthe_0010 | PFAM: transposase IS4 family protein; KEGG: rxy:Rxyl_2488 putative transposase. (307 aa) |
| | Sthe_1124 | PFAM: formyl transferase domain protein; KEGG: cau:Caur_2005 formyl transferase domain- containing protein. (230 aa) |
| | Sthe_1150 | PFAM: formyl transferase domain protein; KEGG: plu:plu1413 hypothetical protein. (230 aa) |
| | Sthe_1155 | PFAM: conserved hypothetical protein; KEGG: rca:Rcas_4270 hypothetical protein. (365 aa) |
| | gyrB | DNA gyrase, B subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. (638 aa) |
| | Sthe_1169 | PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; KEGG: hau:Haur_4637 tRNA/rRNA methyltransferase (SpoU); Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. (293 aa) |
| | fmt | methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family. (314 aa) |
| | nfi | Deoxyribonuclease V; DNA repair enzyme involved in the repair of deaminated bases. Selectively cleaves double-stranded DNA at the second phosphodiester bond 3' to a deoxyinosine leaving behind the intact lesion on the nicked DNA. (224 aa) |
| | tgt | Queuine tRNA-ribosyltransferase; Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, - Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form t [...] (414 aa) |
| | pth | peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family. (214 aa) |
| | ruvC | Crossover junction endodeoxyribonuclease RuvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group. (168 aa) |
| | Sthe_1214 | TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III delta; KEGG: cau:Caur_2419 DNA polymerase III, delta subunit. (340 aa) |
| | aspS | aspartyl-tRNA synthetase; Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps: L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp/Asn); Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily. (609 aa) |
| | Sthe_1222 | PFAM: Amidase; KEGG: afu:AF1954 Glu-tRNA amidotransferase, subunit A (GatA-1); Belongs to the amidase family. (514 aa) |
| | Sthe_1233 | DNA-(apurinic or apyrimidinic site) lyase; KEGG: mxa:MXAN_6425 base excision DNA repair protein, HhH-GPD family; PFAM: HhH-GPD family protein; SMART: HhH-GPD family protein. (220 aa) |
| | truB | tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily. (299 aa) |
| | tyrS | tyrosyl-tRNA synthetase; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr); Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 2 subfamily. (407 aa) |
| | Sthe_1296 | TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; KEGG: hau:Haur_0963 TatD family hydrolase. (261 aa) |
| | Sthe_1301 | KEGG: det:DET1464 DNA polymerase III, alpha subunit; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: DNA polymerase III alpha subunit; PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type; SMART: phosphoesterase PHP domain protein. (1167 aa) |
| | Sthe_1312 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] (379 aa) |
| | queA | S-adenosylmethionine/tRNA-ribosyltransferase- isomerase; Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA). (341 aa) |
| | ruvB | Holliday junction DNA helicase RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. (348 aa) |
| | proS | prolyl-tRNA synthetase; Catalyzes the attachment of proline to tRNA(Pro) in a two- step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro). (483 aa) |
| | rnz | Ribonuclease Z; Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA; Belongs to the RNase Z family. (304 aa) |
| | Sthe_1356 | PFAM: protein of unknown function DUF402; KEGG: rrs:RoseRS_0508 hypothetical protein. (175 aa) |
| | Sthe_1359 | PFAM: protein of unknown function DUF1006; KEGG: rrs:RoseRS_3033 hypothetical protein. (412 aa) |
| | Sthe_1360 | TIGRFAM: DNA binding domain protein, excisionase family; PFAM: regulatory protein MerR; KEGG: cau:Caur_3169 DNA binding domain-containing protein. (220 aa) |
| | Sthe_1377 | TIGRFAM: phage SPO1 DNA polymerase-related protein; PFAM: Uracil-DNA glycosylase superfamily; KEGG: rxy:Rxyl_1787 uracil-DNA glycosylase superfamily. (209 aa) |
| | leuS | TIGRFAM: leucyl-tRNA synthetase; KEGG: rxy:Rxyl_3202 leucyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family. (824 aa) |
| | Sthe_1466 | PFAM: B3/4 domain protein; KEGG: asu:Asuc_1302 B3/4 domain-containing protein. (236 aa) |
| | Sthe_1476 | PFAM: Bifunctional DNA primase/polymerase; KEGG: met:M446_1167 bifunctional DNA primase/polymerase. (458 aa) |
| | Sthe_1488 | PFAM: Resolvase domain; Recombinase; KEGG: deb:DehaBAV1_1037 resolvase domain-containing protein. (559 aa) |
| | Sthe_1550 | PFAM: conserved hypothetical protein; KEGG: cau:Caur_3608 hypothetical protein. (351 aa) |
| | alaS | alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. (879 aa) |
| | polA | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. (915 aa) |
| | cysS | KEGG: rrs:RoseRS_3036 cysteinyl-tRNA synthetase; TIGRFAM: cysteinyl-tRNA synthetase; PFAM: Cysteinyl-tRNA synthetase class Ia; Cysteinyl-tRNA synthetase class Ia DALR; tRNA synthetase class I (M); Belongs to the class-I aminoacyl-tRNA synthetase family. (468 aa) |
| | Sthe_1594 | TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; KEGG: cau:Caur_2072 RNA methyltransferase; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. (252 aa) |
| | Sthe_1596 | Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily. (447 aa) |
| | valS | valyl-tRNA synthetase; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner; Belongs to the class-I aminoacyl-tRNA synthetase family. ValS type 1 subfamily. (894 aa) |
| | Sthe_1613 | TIGRFAM: DNA-3-methyladenine glycosylase; PFAM: methylpurine-DNA glycosylase (MPG); KEGG: rpe:RPE_2751 3-methyladenine DNA glycosylase; Belongs to the DNA glycosylase MPG family. (208 aa) |
| | mutL-2 | DNA mismatch repair protein MutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. (585 aa) |
| | uvrA | Excinuclease ABC, A subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate. (964 aa) |
| | serS | seryl-tRNA synthetase; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L- seryl-tRNA(Sec), which will be further converted into selenocysteinyl- tRNA(Sec). (427 aa) |
| | Sthe_1637 | PFAM: protein of unknown function DUF88; KEGG: amr:AM1_2313 hypothetical protein. (201 aa) |
| | gatB | glutamyl-tRNA(Gln) amidotransferase, B subunit; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatB/GatE family. GatB subfamily. (482 aa) |
| | nfo | Apurinic endonuclease Apn1; Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin. (288 aa) |
| | pheS | TIGRFAM: phenylalanyl-tRNA synthetase, alpha subunit; PFAM: phenylalanyl-tRNA synthetase class IIc; aminoacyl tRNA synthetase class II domain protein; KEGG: rca:Rcas_1438 phenylalanyl-tRNA synthetase, alpha subunit; Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily. (347 aa) |
| | pheT | KEGG: hau:Haur_4633 phenylalanyl-tRNA synthetase, beta subunit; TIGRFAM: phenylalanyl-tRNA synthetase, beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily. (818 aa) |
| | Sthe_1674 | Histidine--tRNA ligase; PFAM: tRNA synthetase class II (G H P and S); Anticodon-binding domain protein; KEGG: rca:Rcas_2915 histidyl-tRNA synthetase. (495 aa) |
| | ruvA | Holliday junction DNA helicase RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. (193 aa) |
| | mfd | Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily. (1173 aa) |
| | mutS2 | MutS2 family protein; Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity; Belongs to the DNA mismatch repair MutS family. MutS2 subfamily. (800 aa) |
| | gyrA | DNA gyrase, A subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. (836 aa) |
| | Sthe_1724 | PFAM: transposase IS4 family protein; KEGG: rxy:Rxyl_2488 putative transposase. (307 aa) |
| | Sthe_1769 | Hypothetical protein; KEGG: rxy:Rxyl_1965 conserved hypothetical protein 374. (361 aa) |
| | hemA | glutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA). (422 aa) |
| | Sthe_1818 | Hypothetical protein; KEGG: rpt:Rpal_1851 high-affinity nickel- transporter. (284 aa) |
| | rlmN | Radical SAM enzyme, Cfr family; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs; Belongs to the radical SAM superfamily. RlmN family. (347 aa) |
| | Sthe_1822 | PFAM: Amidase; KEGG: cau:Caur_1377 amidase. (547 aa) |
| | Sthe_1831 | PFAM: Amidase; KEGG: sma:SAV_7269 amidase. (466 aa) |
| | Sthe_1850 | PFAM: SMC domain protein; Rad50 zinc hook domain protein; KEGG: rca:Rcas_4093 SMC domain-containing protein. (850 aa) |
| | Sthe_1853 | PFAM: NERD domain protein; KEGG: hau:Haur_1680 NERD domain-containing protein. (1361 aa) |
| | rsmG | Methyltransferase GidB; Specifically methylates the N7 position of a guanine in 16S rRNA; Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family. (243 aa) |
| | Sthe_1884 | KEGG: tte:TTE1485 vacuolar-type H+-ATPase subunit H. (161 aa) |
| | Sthe_1898 | 2'-5' RNA ligase; Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester; Belongs to the 2H phosphoesterase superfamily. ThpR family. (194 aa) |
| | recG | ATP-dependent DNA helicase RecG; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily. (824 aa) |
| | Sthe_1909 | KEGG: fre:Franean1_0115 hypothetical protein. (258 aa) |
| | Sthe_1918 | PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; KEGG: yps:YPTB1864 Orf81 bacteriophage 186. (197 aa) |
| | gatA | glutamyl-tRNA(Gln) amidotransferase, A subunit; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu- tRNA(Gln). (497 aa) |
| | gatC | glutamyl-tRNA(Gln) amidotransferase, C subunit; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatC family. (97 aa) |
| | dnaX | DNA polymerase III, subunits gamma and tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. (589 aa) |
| | rsmI | Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA. (285 aa) |
| | rsmH | S-adenosyl-methyltransferase MraW; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA. (326 aa) |
| | Sthe_2016 | TIGRFAM: export-related chaperone CsaA; PFAM: t-RNA-binding domain protein; KEGG: rxy:Rxyl_3199 secretion chaperone CsaA. (109 aa) |
| | Sthe_2018 | PFAM: conserved hypothetical protein; KEGG: cau:Caur_0535 hypothetical protein. (329 aa) |
| | dinB | DNA-directed DNA polymerase; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII. (394 aa) |
| | Sthe_2045 | DNA-directed DNA polymerase; PFAM: UMUC domain protein DNA-repair protein; KEGG: dau:Daud_0758 DNA-directed DNA polymerase. (397 aa) |
| | Sthe_2063 | PFAM: Uracil-DNA glycosylase superfamily; KEGG: ade:Adeh_3973 uracil-DNA glycosylase superfamily protein. (225 aa) |
| | Sthe_2089 | PFAM: type III restriction protein res subunit; protein of unknown function DUF450; SMART: DEAD-like helicases; KEGG: tye:THEYE_A1697 type I site-specific deoxyribonuclease. (947 aa) |
| | Sthe_2091 | KEGG: sus:Acid_0029 ATP-dependent nuclease subunit B-like protein. (1066 aa) |
| | Sthe_2092 | PFAM: UvrD/REP helicase; KEGG: kra:Krad_4408 UvrD/REP helicase; Belongs to the helicase family. UvrD subfamily. (1125 aa) |
| | gltX | glutamyl-tRNA synthetase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily. (497 aa) |
| | Sthe_2213 | PFAM: transposase IS4 family protein; KEGG: rxy:Rxyl_2488 putative transposase. (307 aa) |
| | rnc | Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. (259 aa) |
| | Sthe_2229 | PFAM: Resolvase domain; Recombinase; KEGG: deb:DehaBAV1_1037 resolvase domain-containing protein. (524 aa) |
| | Sthe_2241 | KEGG: rsq:Rsph17025_0127 ATPase-like protein. (377 aa) |
| | Sthe_2242 | PFAM: zinc finger CHC2-family protein; SMART: zinc finger CHC2-family protein; KEGG: rba:RB6344 DNA primase. (198 aa) |
| | Sthe_2250 | PFAM: transposase IS4 family protein; KEGG: rxy:Rxyl_2488 putative transposase. (307 aa) |
| | Sthe_2251 | Hypothetical protein; KEGG: rrs:RoseRS_0068 transposase, IS4 family protein. (371 aa) |
| | Sthe_2267 | PFAM: Resolvase domain; Recombinase; KEGG: cno:NT01CX_2203 DNA recombinase, putative. (558 aa) |
| | Sthe_2275 | PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; KEGG: hch:HCH_06756 putative exonuclease. (335 aa) |
| | argS | arginyl-tRNA synthetase; KEGG: bba:Bd2027 hypothetical protein; TIGRFAM: arginyl-tRNA synthetase. (724 aa) |
| | Sthe_2317 | PFAM: Amidase; KEGG: sus:Acid_7160 amidase. (467 aa) |
| | Sthe_2329 | KEGG: dsy:DSY1442 hypothetical protein. (565 aa) |
| | Sthe_2339 | KEGG: rrs:RoseRS_1757 hypothetical protein. (110 aa) |
| | Sthe_2375 | KEGG: art:Arth_3022 hypothetical protein. (359 aa) |
| | Sthe_2380 | PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; DbpA RNA-binding domain protein; SMART: DEAD-like helicases; helicase domain protein; KEGG: sth:STH1647 ATP-dependent RNA helicase; Belongs to the DEAD box helicase family. (526 aa) |
| | Sthe_2383 | PFAM: ABC transporter related; KEGG: nfa:nfa43950 putative excision nuclease ABC subunit. (488 aa) |
| | trmH | tRNA guanosine-2'-O-methyltransferase; Catalyzes the 2'-O methylation of guanosine at position 18 in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. (190 aa) |
| | Sthe_2427 | PFAM: transposase IS4 family protein; KEGG: rxy:Rxyl_2488 putative transposase. (306 aa) |
| | Sthe_2439 | PFAM: transposase IS4 family protein; KEGG: rxy:Rxyl_2488 putative transposase. (307 aa) |
| | Sthe_2520 | PFAM: Amidase; KEGG: bpt:Bpet1417 glutamyl-tRNA(Gln) amidotransferase subunit A; Belongs to the amidase family. (472 aa) |
| | Sthe_2571 | PFAM: transposase IS4 family protein; KEGG: pcr:Pcryo_2483 transposase, IS4. (307 aa) |
| | Sthe_2638 | PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: gbm:Gbem_1948 YbaK/prolyl-tRNA synthetase associated region. (160 aa) |
| | Sthe_2646 | TIGRFAM: methionyl-tRNA synthetase; PFAM: tRNA synthetase class I (M); KEGG: afw:Anae109_3095 tRNA synthetase class I (M). (525 aa) |
| | metG | methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. (593 aa) |
| | thiI | Thiamine biosynthesis/tRNA modification protein ThiI; Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS. (404 aa) |
| | Sthe_2682 | TIGRFAM: RNA methyltransferase, TrmA family; PFAM: deoxyribonuclease/rho motif-related TRAM; protein of unknown function Met10; (Uracil-5)- methyltransferase; KEGG: dol:Dole_1585 RNA methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. (400 aa) |
| | Sthe_2779 | PFAM: transposase IS4 family protein; KEGG: pcr:Pcryo_2483 transposase, IS4. (307 aa) |
| | Sthe_2784 | PFAM: transposase IS4 family protein; KEGG: pcr:Pcryo_2483 transposase, IS4. (307 aa) |
| | Sthe_2826 | PFAM: transposase IS4 family protein; KEGG: pcr:Pcryo_2483 transposase, IS4. (307 aa) |
| | Sthe_2830 | PFAM: helicase domain protein; SNF2-related protein; type III restriction protein res subunit; SMART: DEAD-like helicase; helicase domain protein; KEGG: noc:Noc_0545 helicase-like. (1266 aa) |
| | Sthe_2834 | PFAM: zinc finger CHC2-family protein; SMART: zinc finger CHC2-family protein; KEGG: hha:Hhal_1100 DNA primase. (214 aa) |
| | Sthe_2835 | KEGG: pca:Pcar_0796 hypothetical protein. (672 aa) |
| | Sthe_2938 | PFAM: transposase IS4 family protein; KEGG: pcr:Pcryo_2483 transposase, IS4. (307 aa) |
| | Sthe_3045 | KEGG: pna:Pnap_2655 hypothetical protein. (101 aa) |
| | Sthe_3057 | PFAM: RES domain protein; KEGG: scl:sce3521 hypothetical protein. (204 aa) |
| | Sthe_3145 | KEGG: sfu:Sfum_0410 hypothetical protein. (1007 aa) |
| | Sthe_3147 | PFAM: helicase domain protein; SMART: helicase domain protein; DEAD-like helicase; KEGG: ppd:Ppro_3669 helicase domain-containing protein. (1130 aa) |
| | Sthe_3166 | formamidopyrimidine-DNA glycosylase; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates. (286 aa) |
| | Sthe_3177 | PFAM: transposase IS4 family protein; KEGG: pcr:Pcryo_2483 transposase, IS4. (307 aa) |
| | trpS | tryptophanyl-tRNA synthetase; Catalyzes the attachment of tryptophan to tRNA(Trp). Belongs to the class-I aminoacyl-tRNA synthetase family. (348 aa) |
| | Sthe_3211 | PFAM: transposase IS4 family protein; KEGG: pcr:Pcryo_2483 transposase, IS4. (307 aa) |
| | vapC | PilT protein domain protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family. (137 aa) |
| | Sthe_3237 | PFAM: Amidase; KEGG: aeh:Mlg_2453 amidase. (539 aa) |
| | Sthe_3246 | Integral membrane protein-like protein; KEGG: bxe:Bxe_A3828 hypothetical protein. (380 aa) |
| | rtcB | PFAM: protein of unknown function UPF0027; KEGG: dal:Dalk_3935 protein of unknown function UPF0027; Belongs to the RtcB family. (487 aa) |
| | Sthe_3255 | PFAM: Amidase; KEGG: bbr:BB4983 amidase; Belongs to the amidase family. (474 aa) |
| | Sthe_3260 | PFAM: HhH-GPD family protein; helix-hairpin-helix motif; iron-sulfur cluster loop; SMART: HhH-GPD family protein; iron-sulfur cluster loop; KEGG: dal:Dalk_4465 A/G-specific adenine glycosylase. (336 aa) |
| | miaA | tRNA delta(2)-isopentenylpyrophosphate transferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family. (330 aa) |
| | vapC-2 | PilT protein domain protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family. (150 aa) |
| | Sthe_3290 | PFAM: Uracil-DNA glycosylase superfamily; KEGG: mxa:MXAN_2371 G/U mismatch-specific DNA glycosylase. (194 aa) |
| | Sthe_3293 | PFAM: Amidase; KEGG: mxa:MXAN_3566 amidase. (542 aa) |
| | Sthe_3325 | KEGG: hypothetical protein. (259 aa) |
| | Sthe_3349 | KEGG: glo:Glov_3686 hypothetical protein. (914 aa) |
| | Sthe_3431 | TIGRFAM: CRISPR-associated protein Cas2; PFAM: CRISPR-associated protein Cas2; KEGG: dds:Ddes_0929 CRISPR-associated protein Cas2. (92 aa) |
| | cas1 | CRISPR-associated protein Cas1; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette. (314 aa) |
| | Sthe_3433 | TIGRFAM: CRISPR-associated protein, Cse3 family; PFAM: CRISPR-associated protein CT1974; KEGG: scl:sce0560 hypothetical protein. (257 aa) |
| | Sthe_3438 | TIGRFAM: CRISPR-associated helicase Cas3; SMART: DEAD-like helicase; KEGG: ppd:Ppro_2343 CRISPR-associated helicase Cas3. (936 aa) |
| | Sthe_3473 | KEGG: psb:Psyr_0099 hypothetical protein. (73 aa) |
| | Sthe_3489 | PFAM: Amidase; KEGG: reu:Reut_B5142 amidase. (506 aa) |
| | cysS-2 | KEGG: aeh:Mlg_1810 cysteinyl-tRNA synthetase; TIGRFAM: cysteinyl-tRNA synthetase; PFAM: Cysteinyl-tRNA synthetase class Ia; tRNA synthetase class I (M); Belongs to the class-I aminoacyl-tRNA synthetase family. (399 aa) |
