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Sthe_1235 | KEGG: rxy:Rxyl_2416 FAD dependent oxidoreductase. (474 aa) | ||||
Sthe_0089 | Transcriptional regulator, TraR/DksA family; PFAM: zinc finger DksA/TraR C4-type; KEGG: sth:STH1241 hypothetical protein. (132 aa) | ||||
Sthe_0139 | PFAM: class II aldolase/adducin family protein; KEGG: tth:TTC0412 L-ribulose-phosphate 4-epimerase. (378 aa) | ||||
rpmH | TIGRFAM: ribosomal protein L34; PFAM: ribosomal protein L34; KEGG: hau:Haur_0767 ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family. (54 aa) | ||||
Sthe_0179 | PFAM: ATPase associated with various cellular activities AAA_5; ATPase associated with various cellular activities AAA_3; von Willebrand factor type A; SMART: von Willebrand factor type A; KEGG: rxy:Rxyl_3152 ATPase associated with various cellular activities, AAA_5. (658 aa) | ||||
priA | Primosomal protein N; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily. (824 aa) | ||||
Sthe_0324 | PFAM: Silent information regulator protein Sir2; KEGG: pla:Plav_2952 silent information regulator protein (SI)r2. (263 aa) | ||||
Sthe_0347 | TIGRFAM: DNA repair protein RadC; PFAM: DNA repair protein RadC; KEGG: rca:Rcas_0037 DNA repair protein RadC; Belongs to the UPF0758 family. (240 aa) | ||||
rpmF | TIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein; KEGG: rca:Rcas_1804 ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family. (68 aa) | ||||
dnaG | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. (615 aa) | ||||
Sthe_0425 | PFAM: AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; magnesium chelatase ChlI subunit; SMART: AAA ATPase; KEGG: rrs:RoseRS_3807 recombination factor protein RarA. (460 aa) | ||||
Sthe_0467 | KEGG: aeh:Mlg_2877 ParB-like partition proteins; TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; SMART: ParB domain protein nuclease; Belongs to the ParB family. (292 aa) | ||||
Sthe_0495 | PFAM: RNA binding S1 domain protein; SMART: RNA binding S1 domain protein; KEGG: cau:Caur_2474 RNA-binding S1 domain- containing protein. (459 aa) | ||||
Sthe_0499 | PFAM: zinc finger DksA/TraR C4-type; KEGG: csc:Csac_1926 TraR/DksA family transcriptional regulator. (130 aa) | ||||
Sthe_0509 | Hypothetical protein. (196 aa) | ||||
Sthe_0600 | PFAM: ADP-ribosylation/Crystallin J1; KEGG: dol:Dole_0265 ADP-ribosylation/crystallin J1. (369 aa) | ||||
rpsU | TIGRFAM: ribosomal protein S21; KEGG: cau:Caur_0492 ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family. (70 aa) | ||||
dtd | D-tyrosyl-tRNA(Tyr) deacylase; An aminoacyl-tRNA editing enzyme that deacylates mischarged D-aminoacyl-tRNAs. Also deacylates mischarged glycyl-tRNA(Ala), protecting cells against glycine mischarging by AlaRS. Acts via tRNA- based rather than protein-based catalysis; rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D- aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl- tRNA entities in vivo and helps enforce protein L-homochirality. Belongs to the DTD family. (149 aa) | ||||
Sthe_0812 | Beta-propeller domains of methanol dehydrogenase type-like protein; KEGG: cms:CMS_0896 putative integral membrane protein. (518 aa) | ||||
gvpA | Gas vesicle protein GVPa; Gas vesicles are small, hollow, gas filled protein structures that are found in several microbial planktonic microorganisms. They allow the positioning of the organism at the favorable depth for growth. GvpA type proteins form the essential core of the structure. (171 aa) | ||||
Sthe_0875 | PFAM: Gas vesicle synthesis GvpLGvpF; KEGG: gur:Gura_2834 gas vesicle synthesis GvpLGvpF. (257 aa) | ||||
Sthe_0877 | PFAM: Gas vesicle synthesis GvpLGvpF; KEGG: pth:PTH_0428 hypothetical protein. (289 aa) | ||||
Sthe_0878 | PFAM: gas vesicle protein GVPa; KEGG: pph:Ppha_1803 gas vesicle protein GVPa. (73 aa) | ||||
Sthe_0879 | PFAM: Gas vesicle synthesis GvpLGvpF; KEGG: pth:PTH_0426 hypothetical protein. (252 aa) | ||||
Sthe_0881 | PFAM: Gas vesicle K; KEGG: pth:PTH_0425 hypothetical protein. (155 aa) | ||||
Sthe_0882 | Gas vesicle protein GVPa; Gas vesicles are small, hollow, gas filled protein structures that are found in several microbial planktonic microorganisms. They allow the positioning of the organism at the favorable depth for growth. (139 aa) | ||||
Sthe_0903 | PFAM: DEAD/DEAH box helicase domain protein; DSH domain protein; helicase domain protein; SMART: DEAD-like helicases; helicase domain protein; AAA ATPase; KEGG: sgr:SGR_5873 putative ATP-dependent RNA helicase. (962 aa) | ||||
Sthe_0921 | KEGG: rrs:RoseRS_3193 hypothetical protein. (375 aa) | ||||
Sthe_0930 | PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicases; helicase domain protein; KEGG: sth:STH1623 ATP-dependent RNA helicase. (779 aa) | ||||
recR | Recombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. (201 aa) | ||||
recO | DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination. (276 aa) | ||||
Sthe_1019 | PFAM: Tetratricopeptide TPR_2 repeat protein; TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: rrs:RoseRS_1879 TPR repeat-containing protein. (285 aa) | ||||
rpsG | Ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. (156 aa) | ||||
rpsJ | Ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. (106 aa) | ||||
rplC | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. (216 aa) | ||||
rplW | Ribosomal protein L25/L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family. (99 aa) | ||||
rplB | Ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. (276 aa) | ||||
rpsC | Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. (224 aa) | ||||
rpmC | TIGRFAM: ribosomal protein L29; PFAM: ribosomal protein L29; KEGG: xau:Xaut_1687 ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family. (73 aa) | ||||
rpsQ | Ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. (95 aa) | ||||
rplN | Ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. (122 aa) | ||||
rplX | Ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit. (108 aa) | ||||
rplE | Ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. (181 aa) | ||||
rpsZ | Ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site. (61 aa) | ||||
rpsH | Ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family. (132 aa) | ||||
rplR | Ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. (125 aa) | ||||
rpsE | Ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. (180 aa) | ||||
rpmD | TIGRFAM: ribosomal protein L30; PFAM: ribosomal protein L30; KEGG: cau:Caur_2387 ribosomal protein L30. (64 aa) | ||||
rplO | Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. (146 aa) | ||||
rpsK | Ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. (136 aa) | ||||
rplQ | TIGRFAM: ribosomal protein L17; PFAM: ribosomal protein L17; KEGG: mrd:Mrad2831_2190 ribosomal protein L17. (117 aa) | ||||
rplM | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. (144 aa) | ||||
rpsI | PFAM: ribosomal protein S9; KEGG: cau:Caur_2400 ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. (147 aa) | ||||
Sthe_1073 | KEGG: hau:Haur_2402 DNA-(apurinic or apyrimidinic site) lyase; PFAM: HhH-GPD family protein; SMART: HhH-GPD family protein; iron-sulfur cluster loop. (247 aa) | ||||
Sthe_1168 | Histone family protein DNA-binding protein; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. (97 aa) | ||||
rpmI | TIGRFAM: ribosomal protein L35; PFAM: ribosomal protein L35; KEGG: deb:DehaBAV1_0679 50S ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family. (66 aa) | ||||
rpsT | Ribosomal protein S20; Binds directly to 16S ribosomal RNA. (91 aa) | ||||
Sthe_1232 | PFAM: Tetratricopeptide TPR_2 repeat protein; TPR repeat-containing protein; Tetratricopeptide TPR_4; KEGG: mag:amb4019 methyltransferase. (643 aa) | ||||
Sthe_1233 | DNA-(apurinic or apyrimidinic site) lyase; KEGG: mxa:MXAN_6425 base excision DNA repair protein, HhH-GPD family; PFAM: HhH-GPD family protein; SMART: HhH-GPD family protein. (220 aa) | ||||
Sthe_1259 | PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: mta:Moth_1052 phosphoesterase, RecJ-like. (347 aa) | ||||
Sthe_1303 | PFAM: Formiminotransferase-cyclodeaminase; KEGG: cau:Caur_3280 formiminotransferase- cyclodeaminase. (246 aa) | ||||
recF | DNA replication and repair protein RecF; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP; Belongs to the RecF family. (412 aa) | ||||
Sthe_1341 | PFAM: selenium-binding protein; KEGG: rde:RD1_2378 selenium binding protein. (456 aa) | ||||
Sthe_1348 | PFAM: class II aldolase/adducin family protein; KEGG: sth:STH188 sugar isomerase. (233 aa) | ||||
Sthe_1385 | PFAM: metallophosphoesterase; KEGG: dge:Dgeo_0219 twin-arginine translocation pathway signal. (314 aa) | ||||
Sthe_1401 | PFAM: ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: cau:Caur_0984 ATPase. (321 aa) | ||||
rpsR | Ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family. (128 aa) | ||||
rpsF | Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. (109 aa) | ||||
hpf | Sigma 54 modulation protein/ribosomal protein S30EA; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth. (194 aa) | ||||
rpsO | Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. (89 aa) | ||||
Sthe_1590 | PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: cau:Caur_1865 ATPase. (338 aa) | ||||
Sthe_1596 | Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily. (447 aa) | ||||
Sthe_1597 | TIGRFAM: primosome, DnaD subunit; PFAM: DnaD and phage-associated region; KEGG: rca:Rcas_3989 primosome, DnaD subunit. (244 aa) | ||||
Sthe_1598 | PFAM: IstB domain protein ATP-binding protein; Chromosomal replication initiator DnaA; SMART: AAA ATPase; KEGG: rrs:RoseRS_1147 IstB ATP binding domain- containing protein. (241 aa) | ||||
rplL | Ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family. (132 aa) | ||||
rplJ | Ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. (178 aa) | ||||
rpmG | TIGRFAM: ribosomal protein L33; PFAM: ribosomal protein L33; KEGG: dth:DICTH_1264 ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family. (56 aa) | ||||
Sthe_1635 | PFAM: ADP-ribosylation/Crystallin J1; KEGG: afu:AF1724 dinitrogenase reductase activating glycohydrolase (DraG). (339 aa) | ||||
rpsB | TIGRFAM: ribosomal protein S2; PFAM: ribosomal protein S2; KEGG: afl:Aflv_1709 ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. (269 aa) | ||||
rplU | Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. (103 aa) | ||||
rpmE | Ribosomal protein L31; Binds the 23S rRNA. (110 aa) | ||||
Sthe_1871 | TIGRFAM: chorismate mutase; PFAM: Chorismate mutase of the AroH class; KEGG: cau:Caur_2228 chorismate mutase. (128 aa) | ||||
Sthe_2007 | TIGRFAM: squalene-hopene cyclase; squalene/oxidosqualene cyclase; PFAM: Prenyltransferase/squalene oxidase; KEGG: ace:Acel_1697 squalene-hopene cyclase. (617 aa) | ||||
Sthe_2047 | PFAM: CbbQ/NirQ/NorQ domain protein; ATPase associated with various cellular activities AAA_5; KEGG: tbd:Tbd_0869 nitric oxide reductase activation protein NorQ. (291 aa) | ||||
rplY | Ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily. (218 aa) | ||||
Sthe_2126 | PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; KEGG: sth:STH1770 methanol dehydrogenase regulatory protein. (315 aa) | ||||
Sthe_2148 | DNA repair protein RecN; May be involved in recombinational repair of damaged DNA. (596 aa) | ||||
Sthe_2155 | Conserved hypothetical protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. (102 aa) | ||||
Sthe_2158 | PFAM: FAD dependent oxidoreductase; KEGG: sus:Acid_7336 FAD dependent oxidoreductase. (520 aa) | ||||
pdxS | Pyridoxine biosynthesis protein; Catalyzes the formation of pyridoxal 5'-phosphate from ribose 5-phosphate (RBP), glyceraldehyde 3-phosphate (G3P) and ammonia. The ammonia is provided by the PdxT subunit. Can also use ribulose 5- phosphate and dihydroxyacetone phosphate as substrates, resulting from enzyme-catalyzed isomerization of RBP and G3P, respectively. Belongs to the PdxS/SNZ family. (294 aa) | ||||
Sthe_2241 | KEGG: rsq:Rsph17025_0127 ATPase-like protein. (377 aa) | ||||
Sthe_2242 | PFAM: zinc finger CHC2-family protein; SMART: zinc finger CHC2-family protein; KEGG: rba:RB6344 DNA primase. (198 aa) | ||||
Sthe_2262 | KEGG: deb:DehaBAV1_0212 hypothetical protein. (618 aa) | ||||
Sthe_2298 | TIGRFAM: ATP/cobalamin adenosyltransferase; PFAM: cobalamin adenosyltransferase; KEGG: sfu:Sfum_1759 ATP--cobalamin adenosyltransferase; Belongs to the Cob(I)alamin adenosyltransferase family. (179 aa) | ||||
Sthe_2333 | PFAM: Tetratricopeptide TPR_2 repeat protein; TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: rrs:RoseRS_0774 TPR repeat-containing protein. (826 aa) | ||||
Sthe_2380 | PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; DbpA RNA-binding domain protein; SMART: DEAD-like helicases; helicase domain protein; KEGG: sth:STH1647 ATP-dependent RNA helicase; Belongs to the DEAD box helicase family. (526 aa) | ||||
Sthe_2632 | PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: scl:sce3000 hypothetical protein. (438 aa) | ||||
Sthe_2721 | PFAM: CMP/dCMP deaminase zinc-binding; KEGG: dCMP deaminase; Dcd1p; K01493 dCMP deaminase. (191 aa) | ||||
Sthe_2744 | KEGG: dat:HRM2_35530 hypothetical protein. (379 aa) | ||||
Sthe_2830 | PFAM: helicase domain protein; SNF2-related protein; type III restriction protein res subunit; SMART: DEAD-like helicase; helicase domain protein; KEGG: noc:Noc_0545 helicase-like. (1266 aa) | ||||
Sthe_2834 | PFAM: zinc finger CHC2-family protein; SMART: zinc finger CHC2-family protein; KEGG: hha:Hhal_1100 DNA primase. (214 aa) | ||||
Sthe_2835 | KEGG: pca:Pcar_0796 hypothetical protein. (672 aa) | ||||
Sthe_2858 | PFAM: ATPase associated with various cellular activities AAA_5; ATPase associated with various cellular activities AAA_3; von Willebrand factor type A; magnesium chelatase ChlI subunit; KEGG: xca:xccb100_0099 MoxR-like ATPase. (650 aa) | ||||
Sthe_2861 | PFAM: ATPase associated with various cellular activities AAA_5; ATPase associated with various cellular activities AAA_3; von Willebrand factor type A; SMART: von Willebrand factor type A; AAA ATPase; KEGG: mxa:MXAN_2475 putative transcriptional regulator. (668 aa) | ||||
Sthe_2862 | PFAM: ATPase associated with various cellular activities AAA_5; ATPase associated with various cellular activities AAA_3; SMART: AAA ATPase; KEGG: mxa:MXAN_2475 putative transcriptional regulator. (301 aa) | ||||
Sthe_3005 | KEGG: lch:Lcho_1164 hexapaptide repeat-containing transferase. (177 aa) | ||||
Sthe_3101 | Hypothetical protein; KEGG: reh:H16_A0732 beta-propeller domains of methanol dehydrogenase-type (homolog). (524 aa) | ||||
Sthe_3105 | KEGG: hypothetical protein. (665 aa) | ||||
Sthe_3134 | PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; KEGG: gur:Gura_0187 ATPase. (332 aa) | ||||
Sthe_3146 | Hypothetical protein. (198 aa) | ||||
Sthe_3147 | PFAM: helicase domain protein; SMART: helicase domain protein; DEAD-like helicase; KEGG: ppd:Ppro_3669 helicase domain-containing protein. (1130 aa) | ||||
Sthe_3170 | KEGG: scl:sce6351 protein kinase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; tyrosine protein kinase; Serine/threonine protein kinase-related; GAF domain protein; SMART: GGDEF domain containing protein; serine/threonine protein kinase; tyrosine protein kinase; GAF domain protein. (1765 aa) | ||||
Sthe_3287 | KEGG: ank:AnaeK_1718 hypothetical protein. (416 aa) |