STRINGSTRING
Sthe_0094 Sthe_0094 Sthe_0470 Sthe_0470 Sthe_0609 Sthe_0609 Sthe_0675 Sthe_0675 Sthe_1242 Sthe_1242 Sthe_2084 Sthe_2084 Sthe_2174 Sthe_2174 Sthe_2189 Sthe_2189 Sthe_2346 Sthe_2346 Sthe_2353 Sthe_2353 Sthe_2955 Sthe_2955 Sthe_3164 Sthe_3164 Sthe_3197 Sthe_3197
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Sthe_0094Transcriptional regulator, LuxR family; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; regulatory protein LuxR; sigma-70 region 4 domain protein; KEGG: rfr:Rfer_4146 sigma-24 (FecI-like); Belongs to the sigma-70 factor family. ECF subfamily. (191 aa)
Sthe_0470RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; sigma-70 region 4 domain protein; KEGG: pth:PTH_2134 DNA-directed RNA polymerase specialized sigma subunit, sigma24-like protein; Belongs to the sigma-70 factor family. ECF subfamily. (195 aa)
Sthe_0609RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: rca:Rcas_0731 ECF subfamily RNA polymerase sigma-24 factor. (224 aa)
Sthe_0675RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: rrs:RoseRS_2793 ECF subfamily RNA polymerase sigma-24 factor. (208 aa)
Sthe_1242RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; sigma-70 region 4 domain protein; KEGG: sgr:SGR_2306 RNA polymerase ECF-subfamily sigma factor. (204 aa)
Sthe_2084RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; sigma-70 region 4 domain protein; KEGG: ank:AnaeK_0241 RNA polymerase, sigma-24 subunit, ECF subfamily. (237 aa)
Sthe_2174RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; sigma-70 region 4 domain protein; KEGG: cts:Ctha_1394 RNA polymerase, sigma-24 subunit, ECF subfamily. (182 aa)
Sthe_2189RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; sigma-70 region 4 domain protein; KEGG: rca:Rcas_2697 ECF subfamily RNA polymerase sigma-24 factor. (194 aa)
Sthe_2346RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; sigma-70 region 4 domain protein; KEGG: rca:Rcas_0988 ECF subfamily RNA polymerase sigma-24 factor. (181 aa)
Sthe_2353Transcriptional regulator, LuxR family; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; regulatory protein LuxR; sigma-70 region 4 domain protein; KEGG: sth:STH2528 RNA polymerase ECF-type sigma factor. (198 aa)
Sthe_2955Putative RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; Tetratricopeptide TPR_2 repeat protein; KEGG: pap:PSPA7_4032 ECF subfamily RNA polymerase sigma factor. (418 aa)
Sthe_3164RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70 factor; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: acp:A2cp1_3324 RNA polymerase, sigma-24 subunit, ECF subfamily. (307 aa)
Sthe_3197RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; sigma-70 region 4 domain protein; KEGG: mxa:MXAN_3686 ECF subfamily RNA polymerase sigma factor. (193 aa)
Your Current Organism:
Sphaerobacter thermophilus
NCBI taxonomy Id: 479434
Other names: S. thermophilus DSM 20745, Sphaerobacter thermophilus DSM 20745, Sphaerobacter thermophilus str. DSM 20745, Sphaerobacter thermophilus strain DSM 20745
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