(41 nodes) Mixed, incl. Water-soluble vitamin biosynthetic process, and Coenzyme A biosynthetic process network (Virgibacillus siamensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GCA_900162695_00326	Unannotated protein. (84 aa)
	GCA_900162695_00327	Unannotated protein. (263 aa)
	GCA_900162695_00517	Unannotated protein. (277 aa)
	GCA_900162695_00633	Unannotated protein. (269 aa)
	GCA_900162695_01065	Unannotated protein. (158 aa)
	GCA_900162695_01074	Unannotated protein. (292 aa)
	GCA_900162695_01137	Unannotated protein. (402 aa)
	GCA_900162695_01201	Unannotated protein. (313 aa)
	GCA_900162695_01442	Unannotated protein. (222 aa)
	GCA_900162695_01443	Unannotated protein. (228 aa)
	GCA_900162695_01446	Unannotated protein. (171 aa)
	GCA_900162695_01448	Unannotated protein. (127 aa)
	GCA_900162695_01449	Unannotated protein. (286 aa)
	GCA_900162695_01450	Unannotated protein. (279 aa)
	GCA_900162695_01451	Unannotated protein. (331 aa)
	GCA_900162695_01452	Unannotated protein. (402 aa)
	GCA_900162695_01453	Unannotated protein. (374 aa)
	GCA_900162695_01454	Unannotated protein. (140 aa)
	GCA_900162695_01456	Unannotated protein. (112 aa)
	GCA_900162695_01457	Unannotated protein. (290 aa)
	GCA_900162695_01845	Unannotated protein. (213 aa)
	GCA_900162695_01846	Unannotated protein. (275 aa)
	GCA_900162695_02163	Unannotated protein. (250 aa)
	GCA_900162695_02228	Unannotated protein. (261 aa)
	GCA_900162695_02605	Unannotated protein. (265 aa)
	GCA_900162695_02783	Unannotated protein. (259 aa)
	GCA_900162695_03064	Unannotated protein. (272 aa)
	GCA_900162695_03295	Unannotated protein. (256 aa)
	GCA_900162695_03296	Unannotated protein. (294 aa)
	GCA_900162695_03297	Unannotated protein. (298 aa)
	GCA_900162695_03299	Unannotated protein. (277 aa)
	GCA_900162695_03300	Unannotated protein. (121 aa)
	GCA_900162695_03301	Unannotated protein. (170 aa)
	GCA_900162695_03302	Unannotated protein. (73 aa)
	GCA_900162695_03513	Unannotated protein. (304 aa)
	GCA_900162695_03582	Unannotated protein. (120 aa)
	GCA_900162695_03630	Unannotated protein. (184 aa)
	GCA_900162695_03747	Unannotated protein. (362 aa)
	GCA_900162695_03748	Unannotated protein. (216 aa)
	GCA_900162695_03749	Unannotated protein. (399 aa)
	GCA_900162695_03750	Unannotated protein. (156 aa)

Your Current Organism:

Virgibacillus siamensis

NCBI taxonomy Id: 480071
Other names: JCM 15395, PCU 312, PCU:312, V. siamensis, Virgibacillus siamensis Tanasupawat et al. 2011, strain MS3-4

Send network to Cytoscape

Export your current network:

... as a bitmap image:

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file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

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same PNG format, but at higher resolution

... as a vector graphic:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
GCA_900162695_00326	GCA_900162695_00327	Unannotated protein.	Unannotated protein.	0.723
GCA_900162695_00327	GCA_900162695_00326	Unannotated protein.	Unannotated protein.	0.723
GCA_900162695_00327	GCA_900162695_01201	Unannotated protein.	Unannotated protein.	0.593
GCA_900162695_00327	GCA_900162695_01456	Unannotated protein.	Unannotated protein.	0.471
GCA_900162695_00327	GCA_900162695_02163	Unannotated protein.	Unannotated protein.	0.499
GCA_900162695_00327	GCA_900162695_02228	Unannotated protein.	Unannotated protein.	0.476
GCA_900162695_00327	GCA_900162695_02783	Unannotated protein.	Unannotated protein.	0.448
GCA_900162695_00327	GCA_900162695_03747	Unannotated protein.	Unannotated protein.	0.915
GCA_900162695_00327	GCA_900162695_03748	Unannotated protein.	Unannotated protein.	0.489
GCA_900162695_00327	GCA_900162695_03749	Unannotated protein.	Unannotated protein.	0.447
GCA_900162695_00327	GCA_900162695_03750	Unannotated protein.	Unannotated protein.	0.521
GCA_900162695_00517	GCA_900162695_01201	Unannotated protein.	Unannotated protein.	0.429
GCA_900162695_00517	GCA_900162695_02163	Unannotated protein.	Unannotated protein.	0.886
GCA_900162695_00517	GCA_900162695_02228	Unannotated protein.	Unannotated protein.	0.566
GCA_900162695_00517	GCA_900162695_02783	Unannotated protein.	Unannotated protein.	0.482
GCA_900162695_00517	GCA_900162695_03747	Unannotated protein.	Unannotated protein.	0.932
GCA_900162695_00517	GCA_900162695_03748	Unannotated protein.	Unannotated protein.	0.922
GCA_900162695_00517	GCA_900162695_03749	Unannotated protein.	Unannotated protein.	0.596
GCA_900162695_00517	GCA_900162695_03750	Unannotated protein.	Unannotated protein.	0.923
GCA_900162695_00633	GCA_900162695_01442	Unannotated protein.	Unannotated protein.	0.537