(39 nodes) Arachidonic acid metabolism network (Absidia glauca)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A163TIU1	Aldo_ket_red domain-containing protein. (278 aa)
	A0A168T0T4	Dipeptidase; Belongs to the metallo-dependent hydrolases superfamily. Peptidase M19 family. (392 aa)
	A0A168SRJ5	AB hydrolase-1 domain-containing protein. (320 aa)
	A0A168RKI3	Fungal_trans domain-containing protein. (745 aa)
	A0A168RKH3	Zn(2)-C6 fungal-type domain-containing protein. (400 aa)
	A0A168QZ21	Uncharacterized protein. (693 aa)
	A0A168QBY7	Leukotriene A(4) hydrolase. (619 aa)
	A0A168Q206	PKS_ER domain-containing protein. (350 aa)
	A0A168Q1S3	Fungal_trans domain-containing protein. (1151 aa)
	A0A168PJK8	Uncharacterized protein. (676 aa)
	A0A168PET7	Aldo_ket_red domain-containing protein. (321 aa)
	A0A168NV68	Uncharacterized protein. (391 aa)
	A0A168NTZ2	AB hydrolase-1 domain-containing protein. (300 aa)
	A0A168MPP6	Aldo_ket_red domain-containing protein. (323 aa)
	A0A168MA68	Aldo_ket_red domain-containing protein. (321 aa)
	A0A168M4Y9	Aldo_ket_red domain-containing protein. (296 aa)
	A0A168LDJ3	Uncharacterized protein. (330 aa)
	A0A168KSP5	Aldo_ket_red domain-containing protein. (309 aa)
	A0A168KLR9	Uncharacterized protein. (718 aa)
	A0A163VEQ4	PKS_ER domain-containing protein. (347 aa)
	A0A163TFH4	Zn(2)-C6 fungal-type domain-containing protein. (780 aa)
	A0A163MMQ2	Aldo_ket_red domain-containing protein. (321 aa)
	A0A163MKE0	Uncharacterized protein. (690 aa)
	A0A163M240	CS domain-containing protein. (209 aa)
	A0A163KR70	Uncharacterized protein. (224 aa)
	A0A163KPF6	Uncharacterized protein. (629 aa)
	A0A163KEE5	AB hydrolase-1 domain-containing protein. (322 aa)
	A0A163KBH1	Hydrolase_4 domain-containing protein. (298 aa)
	A0A163K8G3	Uncharacterized protein. (364 aa)
	A0A163K3Q7	Leuk-A4-hydro_C domain-containing protein. (601 aa)
	A0A163JYI7	Uncharacterized protein. (361 aa)
	A0A163JPM7	Uncharacterized protein. (295 aa)
	A0A163JHI8	AB hydrolase-1 domain-containing protein. (313 aa)
	A0A163JHH0	Uncharacterized protein. (592 aa)
	A0A163JFD2	Aldo_ket_red domain-containing protein. (309 aa)
	A0A163JCY8	Uncharacterized protein. (376 aa)
	A0A163J4P4	Uncharacterized protein. (368 aa)
	A0A163J3I2	CS domain-containing protein. (207 aa)
	A0A163IRD9	Leuk-A4-hydro_C domain-containing protein. (639 aa)

Your Current Organism:

Absidia glauca

NCBI taxonomy Id: 4829
Other names: A. glauca, CBS 101.08, MUCL 10044

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A163IRD9	A0A163JHH0	Leuk-A4-hydro_C domain-containing protein.	Uncharacterized protein.	0.555
A0A163IRD9	A0A163KPF6	Leuk-A4-hydro_C domain-containing protein.	Uncharacterized protein.	0.555
A0A163IRD9	A0A168PJK8	Leuk-A4-hydro_C domain-containing protein.	Uncharacterized protein.	0.555
A0A163J3I2	A0A163MKE0	CS domain-containing protein.	Uncharacterized protein.	0.696
A0A163J3I2	A0A168KLR9	CS domain-containing protein.	Uncharacterized protein.	0.696
A0A163J3I2	A0A168QZ21	CS domain-containing protein.	Uncharacterized protein.	0.696
A0A163J4P4	A0A163KEE5	Uncharacterized protein.	AB hydrolase-1 domain-containing protein.	0.697
A0A163JCY8	A0A163KEE5	Uncharacterized protein.	AB hydrolase-1 domain-containing protein.	0.697
A0A163JFD2	A0A163JPM7	Aldo_ket_red domain-containing protein.	Uncharacterized protein.	0.595
A0A163JFD2	A0A163TIU1	Aldo_ket_red domain-containing protein.	Aldo_ket_red domain-containing protein.	0.580
A0A163JFD2	A0A163VEQ4	Aldo_ket_red domain-containing protein.	PKS_ER domain-containing protein.	0.433
A0A163JFD2	A0A168Q206	Aldo_ket_red domain-containing protein.	PKS_ER domain-containing protein.	0.433
A0A163JHH0	A0A163IRD9	Uncharacterized protein.	Leuk-A4-hydro_C domain-containing protein.	0.555
A0A163JHH0	A0A163K3Q7	Uncharacterized protein.	Leuk-A4-hydro_C domain-containing protein.	0.555
A0A163JHH0	A0A168QBY7	Uncharacterized protein.	Leukotriene A(4) hydrolase.	0.555
A0A163JPM7	A0A163JFD2	Uncharacterized protein.	Aldo_ket_red domain-containing protein.	0.595
A0A163JPM7	A0A163MMQ2	Uncharacterized protein.	Aldo_ket_red domain-containing protein.	0.594
A0A163JPM7	A0A163VEQ4	Uncharacterized protein.	PKS_ER domain-containing protein.	0.416
A0A163JPM7	A0A168KSP5	Uncharacterized protein.	Aldo_ket_red domain-containing protein.	0.595
A0A163JPM7	A0A168M4Y9	Uncharacterized protein.	Aldo_ket_red domain-containing protein.	0.593