(7 nodes) CS domain network (Absidia glauca)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A163J3I2	CS domain-containing protein. (207 aa)
	A0A163IVP5	CS domain-containing protein. (559 aa)
	A0A163KD45	CS domain-containing protein. (668 aa)
	A0A163M240	CS domain-containing protein. (209 aa)
	A0A163MEI7	Uncharacterized protein. (347 aa)
	A0A168MMY9	Uncharacterized protein. (343 aa)
	A0A168SP94	CS domain-containing protein. (195 aa)

Your Current Organism:

Absidia glauca

NCBI taxonomy Id: 4829
Other names: A. glauca, CBS 101.08, MUCL 10044

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A163J3I2	A0A168MMY9	CS domain-containing protein.	Uncharacterized protein.	0.986
A0A163J3I2	A0A168SP94	CS domain-containing protein.	CS domain-containing protein.	0.500
A0A163KD45	A0A168SP94	CS domain-containing protein.	CS domain-containing protein.	0.513
A0A163M240	A0A168MMY9	CS domain-containing protein.	Uncharacterized protein.	0.986
A0A163M240	A0A168SP94	CS domain-containing protein.	CS domain-containing protein.	0.500
A0A163MEI7	A0A168MMY9	Uncharacterized protein.	Uncharacterized protein.	0.998
A0A168MMY9	A0A163J3I2	Uncharacterized protein.	CS domain-containing protein.	0.986
A0A168MMY9	A0A163M240	Uncharacterized protein.	CS domain-containing protein.	0.986
A0A168MMY9	A0A163MEI7	Uncharacterized protein.	Uncharacterized protein.	0.998
A0A168MMY9	A0A168SP94	Uncharacterized protein.	CS domain-containing protein.	0.499
A0A168SP94	A0A163J3I2	CS domain-containing protein.	CS domain-containing protein.	0.500
A0A168SP94	A0A163KD45	CS domain-containing protein.	CS domain-containing protein.	0.513
A0A168SP94	A0A163M240	CS domain-containing protein.	CS domain-containing protein.	0.500
A0A168SP94	A0A168MMY9	CS domain-containing protein.	Uncharacterized protein.	0.499