(35 nodes) Nickel cation transmembrane transporter activity, and Oligopeptide/dipeptide ABC transporter, C-terminal network (Paenibacillus riograndensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	dppB3	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (325 aa)
	dppC3	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (299 aa)
	KWX81201.1	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (533 aa)
	appD5	Peptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily. (325 aa)
	appF11	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily. (320 aa)
	KWX79694.1	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (584 aa)
	appB3	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (317 aa)
	KWX79696.1	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (307 aa)
	appD1	Peptide ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily. (327 aa)
	appF7	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily. (321 aa)
	oppA	Peptide-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (571 aa)
	oppB	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (310 aa)
	oppC	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (315 aa)
	oppD3	Peptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily. (331 aa)
	oppF	Peptide ABC transporter ATP-binding protein; With OppABCD is involved in the transport of oligopeptides; OppF and OppD are ATP-binding proteins; Derived by automated computational analysis using gene prediction method: Protein Homology. (306 aa)
	KWX74348.1	Nickel ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (550 aa)
	KWX74349.1	Peptide ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. (271 aa)
	nikC	Nickel transporter permease NikC; With NikABDE is involved in nickel transport into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology. (268 aa)
	KWX74446.1	Nickel transporter permease NikB; With NikACDE is involved in nickel transport into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology. (309 aa)
	KWX74126.1	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (538 aa)
	KWX74127.1	Peptide permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (316 aa)
	KWX74128.1	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (281 aa)
	dppD	Peptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily. (338 aa)
	ykfD	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily. (309 aa)
	KWX73035.1	Peptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily. (329 aa)
	appF3	Peptide ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily. (330 aa)
	KWX73037.1	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (555 aa)
	dppB1	Peptide ABC transporter permease; Transports peptides consisting of two or three amino acids; Derived by automated computational analysis using gene prediction method: Protein Homology. (334 aa)
	dppC1	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (297 aa)
	KWX72224.1	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (579 aa)
	appB1	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (323 aa)
	KWX72267.1	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (319 aa)
	KWX72226.1	Peptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily. (338 aa)
	appF1	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily. (340 aa)
	oppD1	Peptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily. (356 aa)

Your Current Organism:

Paenibacillus riograndensis

NCBI taxonomy Id: 483937
Other names: CECT 7330, P. riograndensis, Paenibacillus riograndensis Beneduzi et al. 2010, Paenibacillus sonchi genomovar Oryzarum, Paenibacillus sonchi genomovar Riograndensis, strain SBR5

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KWX72224.1	KWX72226.1	AMQ84_26460	AMQ84_26475	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.	0.727
KWX72224.1	KWX72267.1	AMQ84_26460	AMQ84_26470	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.908
KWX72224.1	KWX73035.1	AMQ84_26460	AMQ84_24370	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.	0.431
KWX72224.1	KWX73037.1	AMQ84_26460	AMQ84_24380	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.503
KWX72224.1	KWX74126.1	AMQ84_26460	AMQ84_21400	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.519
KWX72224.1	KWX74127.1	AMQ84_26460	AMQ84_21405	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.847
KWX72224.1	KWX74128.1	AMQ84_26460	AMQ84_21410	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.811
KWX72224.1	KWX74348.1	AMQ84_26460	AMQ84_20285	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nickel ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.534
KWX72224.1	KWX74349.1	AMQ84_26460	AMQ84_20290	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.417
KWX72224.1	KWX74446.1	AMQ84_26460	AMQ84_20305	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nickel transporter permease NikB; With NikACDE is involved in nickel transport into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.806
KWX72224.1	KWX79694.1	AMQ84_26460	AMQ84_06160	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.535
KWX72224.1	KWX79696.1	AMQ84_26460	AMQ84_06170	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.781
KWX72224.1	KWX81201.1	AMQ84_26460	AMQ84_00635	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.532
KWX72224.1	appB1	AMQ84_26460	AMQ84_26465	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.926
KWX72224.1	appB3	AMQ84_26460	AMQ84_06165	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.807
KWX72224.1	appD1	AMQ84_26460	AMQ84_06175	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.	0.428
KWX72224.1	appD5	AMQ84_26460	AMQ84_00645	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.	0.444
KWX72224.1	appF1	AMQ84_26460	AMQ84_26480	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.	0.732
KWX72224.1	dppB1	AMQ84_26460	AMQ84_24385	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter permease; Transports peptides consisting of two or three amino acids; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.796
KWX72224.1	dppB3	AMQ84_26460	AMQ84_00625	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.802

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