(69 nodes) Mixed, incl. ABC-2 family transporter protein, and ABC transporter-like, ATP-binding domain network (Paenibacillus riograndensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	yhcH1	Bacitracin ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (308 aa)
	KWX80373.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (261 aa)
	KWX79676.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (256 aa)
	KWX79677.1	Lysophospholipase; Derived by automated computational analysis using gene prediction method: Protein Homology. (307 aa)
	yhcH5	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (326 aa)
	KWX79679.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (329 aa)
	gyrB	DNA gyrase subunit B; Negatively supercoils closed circular double-stranded DNA; Derived by automated computational analysis using gene prediction method: Protein Homology. (660 aa)
	parC	DNA gyrase subunit A; Derived by automated computational analysis using gene prediction method: Protein Homology. (813 aa)
	KWX79232.1	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (46 aa)
	KWX78319.1	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (231 aa)
	KWX78304.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (257 aa)
	KWX77843.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (217 aa)
	KWX77844.1	ArsR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (110 aa)
	yngC	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (204 aa)
	KWX77847.1	Metal-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (209 aa)
	sigY	RNA polymerase subunit sigma; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. (184 aa)
	KWX77849.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (108 aa)
	KWX77850.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (73 aa)
	KWX77851.1	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (63 aa)
	yxlF	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (303 aa)
	KWX77853.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (256 aa)
	KWX77854.1	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. (127 aa)
	KWX77345.1	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (386 aa)
	KWX77346.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (387 aa)
	yfiL3	Antibiotic ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (311 aa)
	KWX76837.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (204 aa)
	KWX76880.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (530 aa)
	KWX76838.1	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (291 aa)
	KWX76560.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (171 aa)
	KWX76438.1	ROK family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (386 aa)
	KWX76404.1	Permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (270 aa)
	KWX76405.1	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (297 aa)
	KWX76406.1	TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (200 aa)
	KWX75944.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (115 aa)
	drrB	GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (270 aa)
	drrA1	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (341 aa)
	KWX75947.1	MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (154 aa)
	KWX75948.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (283 aa)
	yfiL1	Antibiotic ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (310 aa)
	KWX75443.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (393 aa)
	KWX75444.1	Multidrug ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (382 aa)
	KWX75445.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (59 aa)
	KWX75503.1	GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (122 aa)
	KWX75504.1	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (291 aa)
	KWX75505.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (226 aa)
	KWX75506.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (831 aa)
	KWX75507.1	Macrolide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (226 aa)
	KWX75211.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (255 aa)
	drrA3	Glycosyl transferase family 8; Derived by automated computational analysis using gene prediction method: Protein Homology. (253 aa)
	KWX75213.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (287 aa)
	KWX75214.1	PadR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (109 aa)
	KWX75215.1	MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (168 aa)
	KWX75216.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (189 aa)
	KWX75217.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (161 aa)
	KWX75266.1	TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (231 aa)
	KWX75267.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (344 aa)
	KWX75268.1	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (243 aa)
	KWX73276.1	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (46 aa)
	KWX72468.1	Bacitracin ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (238 aa)
	KWX72469.1	Bacitracin ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (317 aa)
	KWX71039.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (244 aa)
	KWX71040.1	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (233 aa)
	KWX71041.1	GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (124 aa)
	KWX71042.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (248 aa)
	yhcH3	Bacitracin ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (323 aa)
	KWX71044.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (129 aa)
	KWX69533.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (126 aa)
	KWX69534.1	Nitroreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (255 aa)
	RBAM024050	Acetyl xylan esterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (280 aa)

Your Current Organism:

Paenibacillus riograndensis

NCBI taxonomy Id: 483937
Other names: CECT 7330, P. riograndensis, Paenibacillus riograndensis Beneduzi et al. 2010, Paenibacillus sonchi genomovar Oryzarum, Paenibacillus sonchi genomovar Riograndensis, strain SBR5

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KWX69534.1	KWX75443.1	AMQ84_31680	AMQ84_17605	Nitroreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.451
KWX69534.1	KWX75444.1	AMQ84_31680	AMQ84_17610	Nitroreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Multidrug ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.715
KWX69534.1	KWX77345.1	AMQ84_31680	AMQ84_12710	Nitroreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.715
KWX71039.1	KWX71040.1	AMQ84_28900	AMQ84_28905	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.841
KWX71039.1	KWX71041.1	AMQ84_28900	AMQ84_28910	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.831
KWX71039.1	KWX71042.1	AMQ84_28900	AMQ84_28915	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.831
KWX71039.1	KWX71044.1	AMQ84_28900	AMQ84_28925	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.427
KWX71039.1	yhcH3	AMQ84_28900	AMQ84_28920	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Bacitracin ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.774
KWX71040.1	KWX71039.1	AMQ84_28905	AMQ84_28900	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.841
KWX71040.1	KWX71041.1	AMQ84_28905	AMQ84_28910	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.960
KWX71040.1	KWX71042.1	AMQ84_28905	AMQ84_28915	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.890
KWX71040.1	KWX71044.1	AMQ84_28905	AMQ84_28925	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.427
KWX71040.1	KWX79679.1	AMQ84_28905	AMQ84_06075	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.514
KWX71040.1	KWX80373.1	AMQ84_28905	AMQ84_03780	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.514
KWX71040.1	yhcH3	AMQ84_28905	AMQ84_28920	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Bacitracin ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.799
KWX71041.1	KWX71039.1	AMQ84_28910	AMQ84_28900	GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.831
KWX71041.1	KWX71040.1	AMQ84_28910	AMQ84_28905	GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.960
KWX71041.1	KWX71042.1	AMQ84_28910	AMQ84_28915	GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.854
KWX71041.1	KWX71044.1	AMQ84_28910	AMQ84_28925	GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.438
KWX71041.1	KWX75504.1	AMQ84_28910	AMQ84_17975	GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.602

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