(20 nodes) Mixed, incl. NMT1/THI5 like, and Thiamine diphosphate metabolic process network (Paenibacillus riograndensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	KWX77674.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (331 aa)
	ytlD	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (278 aa)
	ytlC	Spermidine/putrescine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (259 aa)
	ytlA	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (335 aa)
	KWX75298.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (337 aa)
	KWX75218.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (258 aa)
	KWX75219.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (250 aa)
	KWX75220.1	FAD/FMN-containing dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (83 aa)
	KWX73669.1	Sulfonate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (260 aa)
	KWX73670.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (269 aa)
	KWX73809.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (252 aa)
	KWX73671.1	Myristoyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (365 aa)
	yhxA	Aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (455 aa)
	KWX71644.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (270 aa)
	KWX71646.1	Nitrate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (253 aa)
	KWX71647.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (97 aa)
	KWX71648.1	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (356 aa)
	KWX71096.1	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (264 aa)
	KWX71097.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (258 aa)
	KWX71098.1	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (350 aa)

Your Current Organism:

Paenibacillus riograndensis

NCBI taxonomy Id: 483937
Other names: CECT 7330, P. riograndensis, Paenibacillus riograndensis Beneduzi et al. 2010, Paenibacillus sonchi genomovar Oryzarum, Paenibacillus sonchi genomovar Riograndensis, strain SBR5

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KWX71096.1	KWX71097.1	AMQ84_29235	AMQ84_29240	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.995
KWX71096.1	KWX71098.1	AMQ84_29235	AMQ84_29245	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.994
KWX71096.1	KWX71646.1	AMQ84_29235	AMQ84_27415	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nitrate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.878
KWX71096.1	KWX71647.1	AMQ84_29235	AMQ84_27420	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.535
KWX71096.1	KWX71648.1	AMQ84_29235	AMQ84_27425	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.841
KWX71096.1	KWX73670.1	AMQ84_29235	AMQ84_21575	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.856
KWX71096.1	KWX73671.1	AMQ84_29235	AMQ84_21585	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Myristoyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.734
KWX71096.1	KWX73809.1	AMQ84_29235	AMQ84_21580	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.849
KWX71096.1	KWX75219.1	AMQ84_29235	AMQ84_18305	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.847
KWX71096.1	KWX75298.1	AMQ84_29235	AMQ84_18295	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.550
KWX71096.1	ytlA	AMQ84_29235	AMQ84_11815	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.541
KWX71096.1	ytlD	AMQ84_29235	AMQ84_11805	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.847
KWX71097.1	KWX71096.1	AMQ84_29240	AMQ84_29235	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.995
KWX71097.1	KWX71098.1	AMQ84_29240	AMQ84_29245	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.996
KWX71097.1	KWX71644.1	AMQ84_29240	AMQ84_27405	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.877
KWX71097.1	KWX71647.1	AMQ84_29240	AMQ84_27420	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.629
KWX71097.1	KWX71648.1	AMQ84_29240	AMQ84_27425	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.866
KWX71097.1	KWX73669.1	AMQ84_29240	AMQ84_21570	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sulfonate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.806
KWX71097.1	KWX73671.1	AMQ84_29240	AMQ84_21585	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Myristoyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.835
KWX71097.1	KWX75218.1	AMQ84_29240	AMQ84_18300	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.652

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