(33 nodes) Binding-protein-dependent transport system inner membrane component, and Bacterial extracellular solute-binding protein network (Paenibacillus riograndensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	KWX79758.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (521 aa)
	lplB5	Protein lplB; Derived by automated computational analysis using gene prediction method: Protein Homology. (299 aa)
	KWX79760.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (289 aa)
	yteP3	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (317 aa)
	KWX79769.1	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (293 aa)
	KWX79770.1	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (539 aa)
	KWX76585.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (572 aa)
	KWX76586.1	Protein lplB; Derived by automated computational analysis using gene prediction method: Protein Homology. (296 aa)
	KWX76659.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (292 aa)
	KWX76440.1	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (284 aa)
	KWX76413.1	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (301 aa)
	KWX76414.1	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (555 aa)
	KWX76225.1	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (533 aa)
	yteP9	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (302 aa)
	KWX76192.1	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (292 aa)
	KWX76227.1	Protein lplB; Derived by automated computational analysis using gene prediction method: Protein Homology. (312 aa)
	KWX76207.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (295 aa)
	KWX76208.1	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (545 aa)
	KWX76212.1	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (534 aa)
	KWX76213.1	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (307 aa)
	KWX76214.1	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (307 aa)
	KWX71704.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (503 aa)
	lplC1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (286 aa)
	lplB1	Sugar ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. (312 aa)
	KWX70930.1	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (552 aa)
	KWX71132.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (301 aa)
	lplB7	Protein lplB; Derived by automated computational analysis using gene prediction method: Protein Homology. (320 aa)
	lplC5	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (292 aa)
	KWX71138.1	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (298 aa)
	KWX70952.1	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (555 aa)
	KWX70254.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (551 aa)
	KWX70255.1	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (294 aa)
	lplB3	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (311 aa)

Your Current Organism:

Paenibacillus riograndensis

NCBI taxonomy Id: 483937
Other names: CECT 7330, P. riograndensis, Paenibacillus riograndensis Beneduzi et al. 2010, Paenibacillus sonchi genomovar Oryzarum, Paenibacillus sonchi genomovar Riograndensis, strain SBR5

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KWX70254.1	KWX70255.1	AMQ84_29705	AMQ84_29710	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.907
KWX70254.1	KWX71132.1	AMQ84_29705	AMQ84_28245	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.680
KWX70254.1	KWX71138.1	AMQ84_29705	AMQ84_28390	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.772
KWX70254.1	KWX76192.1	AMQ84_29705	AMQ84_16005	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.804
KWX70254.1	KWX76207.1	AMQ84_29705	AMQ84_16095	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.575
KWX70254.1	KWX76213.1	AMQ84_29705	AMQ84_16135	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.818
KWX70254.1	KWX76214.1	AMQ84_29705	AMQ84_16140	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.820
KWX70254.1	KWX76227.1	AMQ84_29705	AMQ84_16090	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Protein lplB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.740
KWX70254.1	KWX76413.1	AMQ84_29705	AMQ84_15555	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.819
KWX70254.1	KWX76440.1	AMQ84_29705	AMQ84_15550	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.775
KWX70254.1	KWX76586.1	AMQ84_29705	AMQ84_14655	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Protein lplB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.746
KWX70254.1	KWX76659.1	AMQ84_29705	AMQ84_14660	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.703
KWX70254.1	KWX79760.1	AMQ84_29705	AMQ84_05685	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.678
KWX70254.1	KWX79769.1	AMQ84_29705	AMQ84_05745	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.822
KWX70254.1	lplB1	AMQ84_29705	AMQ84_27780	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.762
KWX70254.1	lplB3	AMQ84_29705	AMQ84_29715	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.870
KWX70254.1	lplB5	AMQ84_29705	AMQ84_05680	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Protein lplB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.769
KWX70254.1	lplB7	AMQ84_29705	AMQ84_28250	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Protein lplB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.759
KWX70254.1	lplC1	AMQ84_29705	AMQ84_27775	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.625
KWX70254.1	lplC5	AMQ84_29705	AMQ84_28385	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.802

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