STRINGSTRING
yugH3 yugH3 KWX81102.1 KWX81102.1 KWX80883.1 KWX80883.1 KWX80884.1 KWX80884.1 KWX80885.1 KWX80885.1 KWX80886.1 KWX80886.1 KWX80887.1 KWX80887.1 patB patB KWX80441.1 KWX80441.1 KWX80445.1 KWX80445.1 KWX80158.1 KWX80158.1 hemL2-2 hemL2-2 KWX79424.1 KWX79424.1 csd csd KWX78990.1 KWX78990.1 KWX78998.1 KWX78998.1 KWX78999.1 KWX78999.1 KWX79005.1 KWX79005.1 KWX79006.1 KWX79006.1 KWX78409.1 KWX78409.1 mccB mccB serC serC KWX78303.1 KWX78303.1 cysD cysD KWX77635.1 KWX77635.1 KWX77647.1 KWX77647.1 KWX77709.1 KWX77709.1 KWX77475.1 KWX77475.1 KWX77554.1 KWX77554.1 KWX77321.1 KWX77321.1 KWX77374.1 KWX77374.1 argD argD hemL1 hemL1 GlyP GlyP mtnE1 mtnE1 mdeA mdeA KWX75725.1 KWX75725.1 KWX75726.1 KWX75726.1 KWX75770.1 KWX75770.1 dapL dapL KWX75502.1 KWX75502.1 dxs dxs lysA lysA KWX74656.1 KWX74656.1 hisC hisC KWX74119.1 KWX74119.1 yhxA yhxA KWX73680.1 KWX73680.1 yflK yflK KWX73739.1 KWX73739.1 glyA3 glyA3 KWX73798.1 KWX73798.1 yugH1 yugH1 KWX73284.1 KWX73284.1 KWX73286.1 KWX73286.1 mtnE3 mtnE3 alr alr KWX73400.1 KWX73400.1 KWX72897.1 KWX72897.1 ilvA ilvA odhA odhA ycxD ycxD KWX71649.1 KWX71649.1 KWX71717.1 KWX71717.1 KWX70214.1 KWX70214.1 KWX70216.1 KWX70216.1 KWX70357.1 KWX70357.1 KWX70224.1 KWX70224.1 KWX70225.1 KWX70225.1 ilvB ilvB
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
yugH3Catalyzes the transamination of the aromatic amino acid forming a ketoacid; first step in aromatic amino acid degradation in lactococci; Derived by automated computational analysis using gene prediction method: Protein Homology. (406 aa)
KWX81102.1GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (471 aa)
KWX80883.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (143 aa)
KWX80884.1Cytoplasmic protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (227 aa)
KWX80885.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (70 aa)
KWX80886.1Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (478 aa)
KWX80887.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (78 aa)
patBCystathionine beta-lyase; Derived by automated computational analysis using gene prediction method: Protein Homology. (392 aa)
KWX80441.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (211 aa)
KWX80445.1Glutamine--scyllo-inositol aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DegT/DnrJ/EryC1 family. (393 aa)
KWX80158.1Fe-S oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (608 aa)
hemL2-2Glutamate-1-semialdehyde aminotransferase; Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate; Derived by automated computational analysis using gene prediction method: Protein Homology. (433 aa)
KWX79424.1Cysteine desulfurase; Derived by automated computational analysis using gene prediction method: Protein Homology. (387 aa)
csdCysteine desulfurase; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine. (408 aa)
KWX78990.1GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (390 aa)
KWX78998.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (528 aa)
KWX78999.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (422 aa)
KWX79005.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (569 aa)
KWX79006.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (568 aa)
KWX78409.1Aminotransferase; Produces methionine from 2-keto-4-methylthiobutyrate and glutamine in vitro; mutations do not affect methionine salvage in vivo however; Derived by automated computational analysis using gene prediction method: Protein Homology. (406 aa)
mccBCatalyzes the formation of cystathionine from L-cysteine and O-succinyl-L-homoserine; Derived by automated computational analysis using gene prediction method: Protein Homology. (399 aa)
serCMFS transporter; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine. (362 aa)
KWX78303.1Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (405 aa)
cysDO-acetylhomoserine aminocarboxypropyltransferase; Catalyzes the formation of L-methionine and acetate from O-acetyl-L-homoserine and methanethiol; Derived by automated computational analysis using gene prediction method: Protein Homology. (430 aa)
KWX77635.1Thiamine pyrophosphokinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (213 aa)
KWX77647.1Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate. (1145 aa)
KWX77709.1Pyruvate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (768 aa)
KWX77475.1GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (604 aa)
KWX77554.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (433 aa)
KWX77321.1Acetolactate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (588 aa)
KWX77374.1Lipopolysaccharide biosynthesis protein RfbH; Derived by automated computational analysis using gene prediction method: Protein Homology. (443 aa)
argDAcetylornithine aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily. (396 aa)
hemL1Glutamate-1-semialdehyde aminotransferase; Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway; Derived by automated computational analysis using gene prediction method: Protein Homology. (438 aa)
GlyPMaltodextrin phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties. (810 aa)
mtnE1Aminotransferase; Produces methionine from 2-keto-4-methylthiobutyrate and glutamine in vitro; mutations do not affect methionine salvage in vivo however; Derived by automated computational analysis using gene prediction method: Protein Homology. (394 aa)
mdeAMethionine gamma-lyase; Catalyzes the formation of methanethiol and 2-ocobutanoate from L-methionine; Derived by automated computational analysis using gene prediction method: Protein Homology. (404 aa)
KWX75725.1Aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (411 aa)
KWX75726.1GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (480 aa)
KWX75770.1Hypothetical protein; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis; Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family. (230 aa)
dapLAspartate aminotransferase; Catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; Derived by automated computational analysis using gene prediction method: Protein Homology. (417 aa)
KWX75502.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1928 aa)
dxs1-deoxy-D-xylulose-5-phosphate synthase; Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (DXP); Belongs to the transketolase family. DXPS subfamily. (634 aa)
lysADiaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine. (444 aa)
KWX74656.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the TPP enzyme family. (544 aa)
hisCHistidinol-phosphate aminotransferase; Catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily. (365 aa)
KWX74119.1Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (472 aa)
yhxAAminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (455 aa)
KWX73680.1Selenocysteine lyase; Derived by automated computational analysis using gene prediction method: Protein Homology. (505 aa)
yflKSulfurase; Derived by automated computational analysis using gene prediction method: Protein Homology. (214 aa)
KWX73739.1GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (532 aa)
glyA3Serine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism. (416 aa)
KWX73798.1Aminotransferase DegT; Derived by automated computational analysis using gene prediction method: Protein Homology. (398 aa)
yugH1Catalyzes the transamination of the aromatic amino acid forming a ketoacid; first step in aromatic amino acid degradation in lactococci; Derived by automated computational analysis using gene prediction method: Protein Homology. (401 aa)
KWX73284.1GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (486 aa)
KWX73286.1Threonine-phosphate decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (364 aa)
mtnE3Aspartate aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (404 aa)
alrAlanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. (393 aa)
KWX73400.1Radical SAM protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (426 aa)
KWX72897.1Alpha-glucan phosphorylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (538 aa)
ilvAThreonine dehydratase; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA. (420 aa)
odhA2-oxoglutarate dehydrogenase; E1 component of the 2-oxoglutarate dehydrogenase (OGDH) complex which catalyzes the decarboxylation of 2-oxoglutarate, the first step in the conversion of 2-oxoglutarate to succinyl-CoA and CO(2). (956 aa)
ycxDGntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (447 aa)
KWX71649.1Cobalamin-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (354 aa)
KWX71717.1Aminotransferase class III; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (433 aa)
KWX70214.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (2749 aa)
KWX70216.1Beta-ketoacyl synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (2802 aa)
KWX70357.1Beta-ketoacyl synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (2550 aa)
KWX70224.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (2184 aa)
KWX70225.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (4177 aa)
ilvBAcetolactate synthase catalytic subunit; Derived by automated computational analysis using gene prediction method: Protein Homology. (582 aa)
Your Current Organism:
Paenibacillus riograndensis
NCBI taxonomy Id: 483937
Other names: CECT 7330, P. riograndensis, Paenibacillus riograndensis Beneduzi et al. 2010, Paenibacillus sonchi genomovar Oryzarum, Paenibacillus sonchi genomovar Riograndensis, strain SBR5
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