STRINGSTRING
ykoV ykoV KWX80413.1 KWX80413.1 recQ recQ KWX79541.1 KWX79541.1 KWX79015.1 KWX79015.1 pcrA pcrA recG recG helD helD ruvA ruvA KWX77011.1 KWX77011.1 addB addB addA addA KWX75775.1 KWX75775.1 KWX74913.1 KWX74913.1 KWX71003.1 KWX71003.1 KWX69385.1 KWX69385.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ykoVDNA repair protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family. (320 aa)
KWX80413.1Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. (803 aa)
recQATP-dependent DNA helicase RecQ; Derived by automated computational analysis using gene prediction method: Protein Homology. (611 aa)
KWX79541.1Rubrerythrin; Derived by automated computational analysis using gene prediction method: Protein Homology. (158 aa)
KWX79015.1Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. (683 aa)
pcrAATP-dependent DNA helicase PcrA; Derived by automated computational analysis using gene prediction method: Protein Homology. (781 aa)
recGATP-dependent DNA helicase; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily. (683 aa)
helDHelicase; Derived by automated computational analysis using gene prediction method: Protein Homology. (785 aa)
ruvAATP-dependent DNA helicase RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. (207 aa)
KWX77011.1DNA helicase UvrD; Derived by automated computational analysis using gene prediction method: Protein Homology. (728 aa)
addBATP-dependent helicase; ATP-dependent DNA helicase; Belongs to the helicase family. AddB/RexB type 1 subfamily. (1175 aa)
addAATP-dependent helicase; ATP-dependent DNA helicase. (1360 aa)
KWX75775.1Molecular chaperone DnaK; Derived by automated computational analysis using gene prediction method: Protein Homology. (243 aa)
KWX74913.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (400 aa)
KWX71003.1Conjugal transfer protein TraR; Derived by automated computational analysis using gene prediction method: Protein Homology. (187 aa)
KWX69385.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (249 aa)
Your Current Organism:
Paenibacillus riograndensis
NCBI taxonomy Id: 483937
Other names: CECT 7330, P. riograndensis, Paenibacillus riograndensis Beneduzi et al. 2010, Paenibacillus sonchi genomovar Oryzarum, Paenibacillus sonchi genomovar Riograndensis, strain SBR5
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