(33 nodes) HAD-like superfamily network (Paenibacillus riograndensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	KWX80859.1	Haloacid dehalogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (257 aa)
	KWX80182.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (237 aa)
	KWX79900.1	Haloacid dehalogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (227 aa)
	KWX79208.1	Beta-phosphoglucomutase; Catalyzes the interconversion of beta-D-glucose 6-phosphate to beta-D-glucose 1-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology. (227 aa)
	pgmB	Beta-phosphoglucomutase; Derived by automated computational analysis using gene prediction method: Protein Homology. (220 aa)
	KWX78859.1	Pyrophosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology. (217 aa)
	KWX78448.1	HAD family hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (250 aa)
	KWX78259.1	Haloacid dehalogenase; Catalyzes the dephosphorylation of 2-6 carbon acid sugars in vitro; Belongs to the HAD-like hydrolase superfamily. NagD family. (269 aa)
	zosA	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. (651 aa)
	KWX77645.1	HAD family hydrolase; Catalyzes the dephosphorylation of 2-6 carbon acid sugars in vitro; Belongs to the HAD-like hydrolase superfamily. NagD family. (262 aa)
	ysaA	Haloacid dehalogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (261 aa)
	KWX77682.1	Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (223 aa)
	ycsE	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (262 aa)
	KWX77141.1	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. (939 aa)
	KWX77173.1	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. (899 aa)
	kdpB	Potassium-transporting ATPase subunit B; Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system. Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IA subfamily. (675 aa)
	KWX76791.1	Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (266 aa)
	KWX76363.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (175 aa)
	KWX75439.1	Beta-phosphoglucomutase; Derived by automated computational analysis using gene prediction method: Protein Homology. (235 aa)
	KWX75465.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (272 aa)
	KWX74989.1	Beta-phosphoglucomutase; Derived by automated computational analysis using gene prediction method: Protein Homology. (209 aa)
	KWX73290.1	Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (266 aa)
	KWX72996.1	2-haloalkanoic acid dehalogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (227 aa)
	KWX72635.1	HAD family hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (205 aa)
	KWX71533.1	Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (290 aa)
	KWX71553.1	Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (277 aa)
	copA	ATPase P; Derived by automated computational analysis using gene prediction method: Protein Homology. (817 aa)
	cadA	Cadmium transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (787 aa)
	KWX70909.1	5'-nucleotidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (228 aa)
	KWX70215.1	Haloacid dehalogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (218 aa)
	KWX70228.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (344 aa)
	KWX69569.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1000 aa)
	KWX69352.1	HAD family hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (237 aa)

Your Current Organism:

Paenibacillus riograndensis

NCBI taxonomy Id: 483937
Other names: CECT 7330, P. riograndensis, Paenibacillus riograndensis Beneduzi et al. 2010, Paenibacillus sonchi genomovar Oryzarum, Paenibacillus sonchi genomovar Riograndensis, strain SBR5

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KWX69352.1	KWX72996.1	AMQ84_30610	AMQ84_24130	HAD family hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	2-haloalkanoic acid dehalogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.618
KWX69352.1	ysaA	AMQ84_30610	AMQ84_11665	HAD family hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Haloacid dehalogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.541
KWX69569.1	KWX74989.1	AMQ84_30490	AMQ84_19215	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Beta-phosphoglucomutase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.919
KWX69569.1	KWX79208.1	AMQ84_30490	AMQ84_07500	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Beta-phosphoglucomutase; Catalyzes the interconversion of beta-D-glucose 6-phosphate to beta-D-glucose 1-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.920
KWX69569.1	pgmB	AMQ84_30490	AMQ84_07720	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Beta-phosphoglucomutase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.920
KWX70215.1	KWX75465.1	AMQ84_29445	AMQ84_17745	Haloacid dehalogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.584
KWX70215.1	KWX80859.1	AMQ84_29445	AMQ84_02050	Haloacid dehalogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Haloacid dehalogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.487
KWX70909.1	KWX72635.1	AMQ84_28130	AMQ84_25585	5'-nucleotidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	HAD family hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.913
KWX70909.1	KWX79900.1	AMQ84_28130	AMQ84_05595	5'-nucleotidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Haloacid dehalogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.914
KWX70909.1	KWX80859.1	AMQ84_28130	AMQ84_02050	5'-nucleotidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Haloacid dehalogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.900
KWX72635.1	KWX70909.1	AMQ84_25585	AMQ84_28130	HAD family hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	5'-nucleotidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.913
KWX72635.1	KWX79900.1	AMQ84_25585	AMQ84_05595	HAD family hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Haloacid dehalogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.923
KWX72635.1	KWX80859.1	AMQ84_25585	AMQ84_02050	HAD family hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Haloacid dehalogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.900
KWX72996.1	KWX69352.1	AMQ84_24130	AMQ84_30610	2-haloalkanoic acid dehalogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	HAD family hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.618
KWX74989.1	KWX69569.1	AMQ84_19215	AMQ84_30490	Beta-phosphoglucomutase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.919
KWX75439.1	KWX75465.1	AMQ84_17575	AMQ84_17745	Beta-phosphoglucomutase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.430
KWX75465.1	KWX70215.1	AMQ84_17745	AMQ84_29445	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Haloacid dehalogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.584
KWX75465.1	KWX75439.1	AMQ84_17745	AMQ84_17575	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Beta-phosphoglucomutase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.430
KWX75465.1	KWX78859.1	AMQ84_17745	AMQ84_08590	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pyrophosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.421
KWX78859.1	KWX75465.1	AMQ84_08590	AMQ84_17745	Pyrophosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.421

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