STRINGSTRING
KWX80780.1 KWX80780.1 mfd mfd KWX80413.1 KWX80413.1 KWX79015.1 KWX79015.1 polA polA uvrA1 uvrA1 ligA2 ligA2 pcrA pcrA uvrA3 uvrA3 uvrB uvrB helD helD KWX77011.1 KWX77011.1 KWX73694.1 KWX73694.1 KWX71531.1 KWX71531.1 KWX70219.1 KWX70219.1 KWX69404.1 KWX69404.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
KWX80780.1Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. (568 aa)
mfdTranscription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily. (1174 aa)
KWX80413.1Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. (803 aa)
KWX79015.1Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. (683 aa)
polADNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. (890 aa)
uvrA1Excinuclease ABC subunit A; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate. (955 aa)
ligA2Aromatic ring-opening dioxygenase LigA; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA. (670 aa)
pcrAATP-dependent DNA helicase PcrA; Derived by automated computational analysis using gene prediction method: Protein Homology. (781 aa)
uvrA3Excinuclease ABC subunit A; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate. (957 aa)
uvrBExcinuclease ABC subunit B; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...] (663 aa)
helDHelicase; Derived by automated computational analysis using gene prediction method: Protein Homology. (785 aa)
KWX77011.1DNA helicase UvrD; Derived by automated computational analysis using gene prediction method: Protein Homology. (728 aa)
KWX73694.1ATP-dependent helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. (769 aa)
KWX71531.1DNA helicase UvrD; Derived by automated computational analysis using gene prediction method: Protein Homology. (775 aa)
KWX70219.1Excinuclease ABC subunit A; Derived by automated computational analysis using gene prediction method: Protein Homology. (807 aa)
KWX69404.1DNA helicase UvrC; Derived by automated computational analysis using gene prediction method: Protein Homology. (368 aa)
Your Current Organism:
Paenibacillus riograndensis
NCBI taxonomy Id: 483937
Other names: CECT 7330, P. riograndensis, Paenibacillus riograndensis Beneduzi et al. 2010, Paenibacillus sonchi genomovar Oryzarum, Paenibacillus sonchi genomovar Riograndensis, strain SBR5
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