(15 nodes) Quorum sensing network (Thermosipho africanus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	THA_1017	Oligopeptide ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily. (323 aa)
	THA_1018	Oligopeptide transport ATP-binding protein OppD; Belongs to the ABC transporter superfamily. (319 aa)
	THA_1019	Oligopeptide ABC transporter, permease protein. (290 aa)
	THA_1020	Oligopeptide ABC transporter, permease protein. (335 aa)
	THA_1021	Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein. (500 aa)
	THA_1393	Dipeptide ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily. (333 aa)
	THA_1394	Oligopeptide transport ATP-binding protein OppD; Belongs to the ABC transporter superfamily. (335 aa)
	THA_1395	Dipeptide ABC transporter, permease protein. (842 aa)
	THA_1396	Binding-protein-dependent transport systems inner membrane component. (477 aa)
	THA_1397	Extracellular solute-binding protein, family 5, putative. (607 aa)
	THA_145	Extracellular solute-binding protein, family 5. (614 aa)
	THA_30	Oligopeptide ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily. (380 aa)
	THA_31	Oligopeptide ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily. (338 aa)
	THA_32	Oligopeptide transport system permease protein AppC. (304 aa)
	THA_33	Oligopeptide transport system permease protein AppB. (345 aa)

Your Current Organism:

Thermosipho africanus

NCBI taxonomy Id: 484019
Other names: T. africanus TCF52B, Thermosipho africanus TCF52B, Thermosipho africanus str. TCF52B, Thermosipho africanus strain TCF52B

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
THA_1017	THA_1018	Oligopeptide ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.	Oligopeptide transport ATP-binding protein OppD; Belongs to the ABC transporter superfamily.	0.825
THA_1017	THA_1019	Oligopeptide ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.	Oligopeptide ABC transporter, permease protein.	0.993
THA_1017	THA_1020	Oligopeptide ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.	Oligopeptide ABC transporter, permease protein.	0.935
THA_1017	THA_1021	Oligopeptide ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.	Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein.	0.801
THA_1017	THA_1395	Oligopeptide ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.	Dipeptide ABC transporter, permease protein.	0.743
THA_1017	THA_1396	Oligopeptide ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.	Binding-protein-dependent transport systems inner membrane component.	0.660
THA_1017	THA_145	Oligopeptide ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.	Extracellular solute-binding protein, family 5.	0.442
THA_1017	THA_30	Oligopeptide ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.	Oligopeptide ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.	0.483
THA_1017	THA_32	Oligopeptide ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.	Oligopeptide transport system permease protein AppC.	0.860
THA_1017	THA_33	Oligopeptide ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.	Oligopeptide transport system permease protein AppB.	0.756
THA_1018	THA_1017	Oligopeptide transport ATP-binding protein OppD; Belongs to the ABC transporter superfamily.	Oligopeptide ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.	0.825
THA_1018	THA_1019	Oligopeptide transport ATP-binding protein OppD; Belongs to the ABC transporter superfamily.	Oligopeptide ABC transporter, permease protein.	0.995
THA_1018	THA_1020	Oligopeptide transport ATP-binding protein OppD; Belongs to the ABC transporter superfamily.	Oligopeptide ABC transporter, permease protein.	0.946
THA_1018	THA_1021	Oligopeptide transport ATP-binding protein OppD; Belongs to the ABC transporter superfamily.	Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein.	0.779
THA_1018	THA_1395	Oligopeptide transport ATP-binding protein OppD; Belongs to the ABC transporter superfamily.	Dipeptide ABC transporter, permease protein.	0.806
THA_1018	THA_1396	Oligopeptide transport ATP-binding protein OppD; Belongs to the ABC transporter superfamily.	Binding-protein-dependent transport systems inner membrane component.	0.750
THA_1018	THA_30	Oligopeptide transport ATP-binding protein OppD; Belongs to the ABC transporter superfamily.	Oligopeptide ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.	0.524
THA_1018	THA_32	Oligopeptide transport ATP-binding protein OppD; Belongs to the ABC transporter superfamily.	Oligopeptide transport system permease protein AppC.	0.891
THA_1018	THA_33	Oligopeptide transport ATP-binding protein OppD; Belongs to the ABC transporter superfamily.	Oligopeptide transport system permease protein AppB.	0.794
THA_1019	THA_1017	Oligopeptide ABC transporter, permease protein.	Oligopeptide ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.	0.993