(14 nodes) Short-chain dehydrogenase/reductase SDR network (Sphingobium sp. YBL2)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AJR23276.1	Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (227 aa)
	AJR23283.1	Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (300 aa)
	AJR23288.1	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (271 aa)
	AJR23337.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (308 aa)
	AJR23340.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (260 aa)
	AJR23372.1	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (241 aa)
	AJR24189.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (266 aa)
	AJR24194.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (266 aa)
	AJR25407.1	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (260 aa)
	AJR26490.1	2-deoxy-D-gluconate 3-dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (261 aa)
	AJR25438.1	Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (258 aa)
	AJR25556.1	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (241 aa)
	AJR25673.1	Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (280 aa)
	AJR26565.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (269 aa)

Your Current Organism:

Sphingobium sp. YBL2

NCBI taxonomy Id: 484429
Other names: S. sp. YBL2

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR23276.1	AJR23288.1	TZ53_05400	TZ53_05485	Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.699
AJR23276.1	AJR24189.1	TZ53_05400	TZ53_11085	Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.777
AJR23276.1	AJR24194.1	TZ53_05400	TZ53_11115	Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.778
AJR23276.1	AJR25438.1	TZ53_05400	TZ53_18570	Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.731
AJR23276.1	AJR25556.1	TZ53_05400	TZ53_19275	Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.557
AJR23276.1	AJR26490.1	TZ53_05400	TZ53_18530	Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	2-deoxy-D-gluconate 3-dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.759
AJR23283.1	AJR23337.1	TZ53_05440	TZ53_05830	Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.750
AJR23283.1	AJR24194.1	TZ53_05440	TZ53_11115	Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.794
AJR23283.1	AJR25407.1	TZ53_05440	TZ53_18390	Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.773
AJR23283.1	AJR25438.1	TZ53_05440	TZ53_18570	Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.772
AJR23283.1	AJR25556.1	TZ53_05440	TZ53_19275	Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.635
AJR23283.1	AJR25673.1	TZ53_05440	TZ53_19945	Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.769
AJR23283.1	AJR26565.1	TZ53_05440	TZ53_21700	Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.774
AJR23288.1	AJR23276.1	TZ53_05485	TZ53_05400	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.699
AJR23288.1	AJR23337.1	TZ53_05485	TZ53_05830	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.718
AJR23288.1	AJR25438.1	TZ53_05485	TZ53_18570	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.772
AJR23288.1	AJR26565.1	TZ53_05485	TZ53_21700	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.772
AJR23337.1	AJR23283.1	TZ53_05830	TZ53_05440	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.750
AJR23337.1	AJR23288.1	TZ53_05830	TZ53_05485	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.718
AJR23337.1	AJR23372.1	TZ53_05830	TZ53_06075	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.756