(6 nodes) KR domain network (Sphingobium sp. YBL2)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AJR23283.1	Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (300 aa)
	AJR23340.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (260 aa)
	AJR24194.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (266 aa)
	AJR25556.1	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (241 aa)
	AJR25673.1	Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (280 aa)
	AJR26565.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (269 aa)

Your Current Organism:

Sphingobium sp. YBL2

NCBI taxonomy Id: 484429
Other names: S. sp. YBL2

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR23283.1	AJR24194.1	TZ53_05440	TZ53_11115	Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.794
AJR23283.1	AJR25556.1	TZ53_05440	TZ53_19275	Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.635
AJR23283.1	AJR25673.1	TZ53_05440	TZ53_19945	Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.769
AJR23283.1	AJR26565.1	TZ53_05440	TZ53_21700	Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.774
AJR23340.1	AJR25556.1	TZ53_05845	TZ53_19275	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.617
AJR23340.1	AJR25673.1	TZ53_05845	TZ53_19945	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.767
AJR24194.1	AJR23283.1	TZ53_11115	TZ53_05440	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.794
AJR24194.1	AJR25556.1	TZ53_11115	TZ53_19275	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.565
AJR24194.1	AJR25673.1	TZ53_11115	TZ53_19945	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.770
AJR24194.1	AJR26565.1	TZ53_11115	TZ53_21700	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.795
AJR25556.1	AJR23283.1	TZ53_19275	TZ53_05440	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.635
AJR25556.1	AJR23340.1	TZ53_19275	TZ53_05845	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.617
AJR25556.1	AJR24194.1	TZ53_19275	TZ53_11115	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.565
AJR25556.1	AJR25673.1	TZ53_19275	TZ53_19945	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.577
AJR25556.1	AJR26565.1	TZ53_19275	TZ53_21700	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.638
AJR25673.1	AJR23283.1	TZ53_19945	TZ53_05440	Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.769
AJR25673.1	AJR23340.1	TZ53_19945	TZ53_05845	Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.767
AJR25673.1	AJR24194.1	TZ53_19945	TZ53_11115	Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.770
AJR25673.1	AJR25556.1	TZ53_19945	TZ53_19275	Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.577
AJR25673.1	AJR26565.1	TZ53_19945	TZ53_21700	Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.764