(5 nodes) Mixed, incl. MaoC like domain, and acyl-CoA dehydrogenase activity network (Sphingobium sp. YBL2)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AJR25395.1	Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (251 aa)
	AJR25396.1	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (284 aa)
	AJR25398.1	Dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology. (129 aa)
	AJR25399.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (152 aa)
	AJR25400.1	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (387 aa)

Your Current Organism:

Sphingobium sp. YBL2

NCBI taxonomy Id: 484429
Other names: S. sp. YBL2

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR25395.1	AJR25396.1	TZ53_18330	TZ53_18335	Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.801
AJR25395.1	AJR25398.1	TZ53_18330	TZ53_18345	Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.709
AJR25395.1	AJR25399.1	TZ53_18330	TZ53_18350	Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.618
AJR25395.1	AJR25400.1	TZ53_18330	TZ53_18355	Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.711
AJR25396.1	AJR25395.1	TZ53_18335	TZ53_18330	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.801
AJR25396.1	AJR25398.1	TZ53_18335	TZ53_18345	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.704
AJR25396.1	AJR25399.1	TZ53_18335	TZ53_18350	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.618
AJR25396.1	AJR25400.1	TZ53_18335	TZ53_18355	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.707
AJR25398.1	AJR25395.1	TZ53_18345	TZ53_18330	Dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.709
AJR25398.1	AJR25396.1	TZ53_18345	TZ53_18335	Dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.704
AJR25398.1	AJR25399.1	TZ53_18345	TZ53_18350	Dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.790
AJR25398.1	AJR25400.1	TZ53_18345	TZ53_18355	Dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.870
AJR25399.1	AJR25395.1	TZ53_18350	TZ53_18330	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.618
AJR25399.1	AJR25396.1	TZ53_18350	TZ53_18335	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.618
AJR25399.1	AJR25398.1	TZ53_18350	TZ53_18345	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.790
AJR25399.1	AJR25400.1	TZ53_18350	TZ53_18355	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.773
AJR25400.1	AJR25395.1	TZ53_18355	TZ53_18330	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.711
AJR25400.1	AJR25396.1	TZ53_18355	TZ53_18335	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.707
AJR25400.1	AJR25398.1	TZ53_18355	TZ53_18345	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.870
AJR25400.1	AJR25399.1	TZ53_18355	TZ53_18350	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.773