6 items (Sphingobium sp. YBL2) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AJR23510.1	Cytochrome C oxidase subunit III; Derived by automated computational analysis using gene prediction method: Protein Homology. (205 aa)
	AJR25694.1	Ubiquinol oxidase subunit II; Derived by automated computational analysis using gene prediction method: Protein Homology. (377 aa)
	AJR25695.1	Cytochrome o ubiquinol oxidase subunit I; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the heme-copper respiratory oxidase family. (667 aa)
	AJR25696.1	Cytochrome o ubiquinol oxidase subunit III; Derived by automated computational analysis using gene prediction method: Protein Homology. (207 aa)
	AJR25697.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (145 aa)
	AJR25698.1	Surfeit locus 1 family protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (241 aa)

Your Current Organism:

Sphingobium sp. YBL2

NCBI taxonomy Id: 484429
Other names: S. sp. YBL2

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR23510.1	AJR25694.1	TZ53_06985	TZ53_20065	Cytochrome C oxidase subunit III; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ubiquinol oxidase subunit II; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
AJR23510.1	AJR25695.1	TZ53_06985	TZ53_20070	Cytochrome C oxidase subunit III; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytochrome o ubiquinol oxidase subunit I; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the heme-copper respiratory oxidase family.	0.835
AJR23510.1	AJR25696.1	TZ53_06985	TZ53_20075	Cytochrome C oxidase subunit III; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytochrome o ubiquinol oxidase subunit III; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.820
AJR23510.1	AJR25697.1	TZ53_06985	TZ53_20080	Cytochrome C oxidase subunit III; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
AJR23510.1	AJR25698.1	TZ53_06985	TZ53_20085	Cytochrome C oxidase subunit III; Derived by automated computational analysis using gene prediction method: Protein Homology.	Surfeit locus 1 family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.702
AJR25694.1	AJR23510.1	TZ53_20065	TZ53_06985	Ubiquinol oxidase subunit II; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytochrome C oxidase subunit III; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
AJR25694.1	AJR25695.1	TZ53_20065	TZ53_20070	Ubiquinol oxidase subunit II; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytochrome o ubiquinol oxidase subunit I; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the heme-copper respiratory oxidase family.	0.999
AJR25694.1	AJR25696.1	TZ53_20065	TZ53_20075	Ubiquinol oxidase subunit II; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytochrome o ubiquinol oxidase subunit III; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
AJR25694.1	AJR25697.1	TZ53_20065	TZ53_20080	Ubiquinol oxidase subunit II; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
AJR25694.1	AJR25698.1	TZ53_20065	TZ53_20085	Ubiquinol oxidase subunit II; Derived by automated computational analysis using gene prediction method: Protein Homology.	Surfeit locus 1 family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.957
AJR25695.1	AJR23510.1	TZ53_20070	TZ53_06985	Cytochrome o ubiquinol oxidase subunit I; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the heme-copper respiratory oxidase family.	Cytochrome C oxidase subunit III; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.835
AJR25695.1	AJR25694.1	TZ53_20070	TZ53_20065	Cytochrome o ubiquinol oxidase subunit I; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the heme-copper respiratory oxidase family.	Ubiquinol oxidase subunit II; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
AJR25695.1	AJR25696.1	TZ53_20070	TZ53_20075	Cytochrome o ubiquinol oxidase subunit I; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the heme-copper respiratory oxidase family.	Cytochrome o ubiquinol oxidase subunit III; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
AJR25695.1	AJR25697.1	TZ53_20070	TZ53_20080	Cytochrome o ubiquinol oxidase subunit I; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the heme-copper respiratory oxidase family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
AJR25695.1	AJR25698.1	TZ53_20070	TZ53_20085	Cytochrome o ubiquinol oxidase subunit I; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the heme-copper respiratory oxidase family.	Surfeit locus 1 family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.952
AJR25696.1	AJR23510.1	TZ53_20075	TZ53_06985	Cytochrome o ubiquinol oxidase subunit III; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytochrome C oxidase subunit III; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.820
AJR25696.1	AJR25694.1	TZ53_20075	TZ53_20065	Cytochrome o ubiquinol oxidase subunit III; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ubiquinol oxidase subunit II; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
AJR25696.1	AJR25695.1	TZ53_20075	TZ53_20070	Cytochrome o ubiquinol oxidase subunit III; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytochrome o ubiquinol oxidase subunit I; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the heme-copper respiratory oxidase family.	0.999
AJR25696.1	AJR25697.1	TZ53_20075	TZ53_20080	Cytochrome o ubiquinol oxidase subunit III; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
AJR25696.1	AJR25698.1	TZ53_20075	TZ53_20085	Cytochrome o ubiquinol oxidase subunit III; Derived by automated computational analysis using gene prediction method: Protein Homology.	Surfeit locus 1 family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.950