STRINGSTRING
AJR22439.1 AJR22439.1 AJR22440.1 AJR22440.1 AJR22534.1 AJR22534.1 AJR23024.1 AJR23024.1 AJR23089.1 AJR23089.1 AJR23127.1 AJR23127.1 AJR23162.1 AJR23162.1 AJR26169.1 AJR26169.1 AJR23164.1 AJR23164.1 AJR23749.1 AJR23749.1 AJR23912.1 AJR23912.1 AJR24132.1 AJR24132.1 AJR24289.1 AJR24289.1 AJR24290.1 AJR24290.1 AJR24292.1 AJR24292.1 AJR24700.1 AJR24700.1 AJR24701.1 AJR24701.1 lptD lptD AJR24739.1 AJR24739.1 pdxA pdxA rsmA rsmA AJR24771.1 AJR24771.1 bamA bamA AJR24836.1 AJR24836.1 bamD bamD AJR26453.1 AJR26453.1 lolD lolD AJR25547.1 AJR25547.1 AJR25720.1 AJR25720.1 lspA lspA AJR25854.1 AJR25854.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
AJR22439.1Permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (406 aa)
AJR22440.1Permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (367 aa)
AJR22534.1Lipoprotein; Derived by automated computational analysis using gene prediction method: Protein Homology. (328 aa)
AJR23024.1Outer membrane lipoprotein OmlA; Derived by automated computational analysis using gene prediction method: Protein Homology. (189 aa)
AJR23089.1OmpA family protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (287 aa)
AJR23127.1Cell envelope biogenesis protein LolA; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane). (217 aa)
AJR23162.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (243 aa)
AJR26169.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (149 aa)
AJR23164.1Secreted (periplasmic)-like protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (164 aa)
AJR23749.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (462 aa)
AJR23912.1Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (982 aa)
AJR24132.1ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (261 aa)
AJR24289.1OstA family protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (187 aa)
AJR24290.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (215 aa)
AJR24292.1Cold-shock protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (277 aa)
AJR24700.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (629 aa)
AJR24701.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (267 aa)
lptDOrganic solvent tolerance protein; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family. (754 aa)
AJR24739.1Peptidylprolyl isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (461 aa)
pdxA4-hydroxythreonine-4-phosphate dehydrogenase; Catalyzes the NAD(P)-dependent oxidation of 4-(phosphooxy)-L- threonine (HTP) into 2-amino-3-oxo-4-(phosphooxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP). (341 aa)
rsmA16S rRNA methyltransferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. (285 aa)
AJR24771.1Pyrrolo-quinoline quinone; Derived by automated computational analysis using gene prediction method: Protein Homology. (453 aa)
bamAMembrane protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. (879 aa)
AJR24836.1Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (219 aa)
bamDTransporter; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. (261 aa)
AJR26453.1Cell envelope biogenesis protein OmpA; Derived by automated computational analysis using gene prediction method: Protein Homology. (223 aa)
lolDABC transporter; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner. Belongs to the ABC transporter superfamily. Lipoprotein translocase (TC 3.A.1.125) family. (229 aa)
AJR25547.1ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (416 aa)
AJR25720.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (136 aa)
lspAPeptidase A8; This protein specifically catalyzes the removal of signal peptides from prolipoproteins; Belongs to the peptidase A8 family. (172 aa)
AJR25854.1Flagellar motor protein MotB; Derived by automated computational analysis using gene prediction method: Protein Homology. (358 aa)
Your Current Organism:
Sphingobium sp. YBL2
NCBI taxonomy Id: 484429
Other names: S. sp. YBL2
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