(43 nodes) Mixed, incl. Nucleotide-diphospho-sugar transferases, and Acyltransferase 3 domain network (Sphingobium sp. YBL2)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AJR26089.1	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (278 aa)
	AJR22786.1	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (262 aa)
	AJR23722.1	Glycoside hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (525 aa)
	AJR23890.1	GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (231 aa)
	AJR23966.1	Gluconolaconase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1014 aa)
	AJR24242.1	Acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (346 aa)
	AJR24281.1	CelD-like protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (351 aa)
	AJR24298.1	LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (304 aa)
	AJR24458.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (428 aa)
	AJR26367.1	2'-5' RNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology. (184 aa)
	AJR26381.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (244 aa)
	AJR24613.1	Nuclease; Derived by automated computational analysis using gene prediction method: Protein Homology. (122 aa)
	AJR24692.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (345 aa)
	AJR26403.1	Succinyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (360 aa)
	AJR24791.1	Antibiotic biosynthesis monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (114 aa)
	AJR24861.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (315 aa)
	AJR24898.1	Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (320 aa)
	AJR25247.1	Ceramide glucosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (372 aa)
	AJR26474.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (422 aa)
	AJR26476.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (77 aa)
	AJR25343.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (471 aa)
	AJR25344.1	long-chain-fatty-acyl-CoA reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (485 aa)
	AJR25346.1	long-chain-fatty-acyl-CoA reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (470 aa)
	AJR25575.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (165 aa)
	AJR25598.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (391 aa)
	AJR25599.1	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (271 aa)
	AJR25600.1	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. (475 aa)
	AJR25601.1	Exopolysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (452 aa)
	AJR25602.1	Capsular biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (305 aa)
	AJR25603.1	Glycosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyltransferase 26 family. (274 aa)
	AJR25604.1	Polysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (429 aa)
	AJR26515.1	Exopolysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (454 aa)
	AJR25605.1	Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (309 aa)
	AJR25606.1	Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (318 aa)
	AJR25607.1	Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (322 aa)
	AJR25608.1	1,4-beta-xylanase; Derived by automated computational analysis using gene prediction method: Protein Homology. (375 aa)
	AJR25609.1	Acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (361 aa)
	AJR25610.1	Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (311 aa)
	AJR26516.1	Beta-glucanase; Derived by automated computational analysis using gene prediction method: Protein Homology. (381 aa)
	AJR25661.1	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (495 aa)
	AJR25692.1	Family 2 glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (284 aa)
	AJR25966.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (295 aa)
	AJR26022.1	Cation-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (145 aa)

Your Current Organism:

Sphingobium sp. YBL2

NCBI taxonomy Id: 484429
Other names: S. sp. YBL2

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... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR22786.1	AJR23722.1	TZ53_02375	TZ53_08315	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycoside hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.553
AJR22786.1	AJR23890.1	TZ53_02375	TZ53_09305	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.580
AJR22786.1	AJR23966.1	TZ53_02375	TZ53_09775	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Gluconolaconase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.545
AJR22786.1	AJR24242.1	TZ53_02375	TZ53_11415	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.555
AJR22786.1	AJR24281.1	TZ53_02375	TZ53_11640	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	CelD-like protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.699
AJR22786.1	AJR24298.1	TZ53_02375	TZ53_11740	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.569
AJR22786.1	AJR24458.1	TZ53_02375	TZ53_12710	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.796
AJR22786.1	AJR24692.1	TZ53_02375	TZ53_14105	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.749
AJR22786.1	AJR24861.1	TZ53_02375	TZ53_15120	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.551
AJR22786.1	AJR24898.1	TZ53_02375	TZ53_15370	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.657
AJR22786.1	AJR25247.1	TZ53_02375	TZ53_17435	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ceramide glucosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.775
AJR22786.1	AJR25600.1	TZ53_02375	TZ53_19535	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.769
AJR22786.1	AJR25602.1	TZ53_02375	TZ53_19545	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Capsular biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.568
AJR22786.1	AJR25606.1	TZ53_02375	TZ53_19570	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.401
AJR22786.1	AJR25609.1	TZ53_02375	TZ53_19585	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.446
AJR22786.1	AJR25661.1	TZ53_02375	TZ53_19880	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.740
AJR22786.1	AJR25692.1	TZ53_02375	TZ53_20055	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Family 2 glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.769
AJR22786.1	AJR26022.1	TZ53_02375	TZ53_22035	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cation-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.732
AJR22786.1	AJR26089.1	TZ53_02375	TZ53_01525	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.451
AJR22786.1	AJR26367.1	TZ53_02375	TZ53_12795	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	2'-5' RNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.743