(7 nodes) Mixed, incl. Cell-substrate adhesion, and Methyltransferase domain network (Sphingobium sp. YBL2)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AJR22786.1	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (262 aa)
	AJR24458.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (428 aa)
	AJR26403.1	Succinyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (360 aa)
	AJR25247.1	Ceramide glucosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (372 aa)
	AJR26474.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (422 aa)
	AJR26516.1	Beta-glucanase; Derived by automated computational analysis using gene prediction method: Protein Homology. (381 aa)
	AJR25692.1	Family 2 glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (284 aa)

Your Current Organism:

Sphingobium sp. YBL2

NCBI taxonomy Id: 484429
Other names: S. sp. YBL2

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same PNG format, but at higher resolution

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR22786.1	AJR24458.1	TZ53_02375	TZ53_12710	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.796
AJR22786.1	AJR25247.1	TZ53_02375	TZ53_17435	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ceramide glucosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.775
AJR22786.1	AJR25692.1	TZ53_02375	TZ53_20055	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Family 2 glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.769
AJR22786.1	AJR26403.1	TZ53_02375	TZ53_14575	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Succinyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.771
AJR22786.1	AJR26474.1	TZ53_02375	TZ53_17465	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.744
AJR22786.1	AJR26516.1	TZ53_02375	TZ53_19595	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Beta-glucanase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.716
AJR24458.1	AJR22786.1	TZ53_12710	TZ53_02375	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.796
AJR24458.1	AJR25247.1	TZ53_12710	TZ53_17435	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ceramide glucosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.760
AJR24458.1	AJR25692.1	TZ53_12710	TZ53_20055	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Family 2 glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.760
AJR24458.1	AJR26403.1	TZ53_12710	TZ53_14575	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Succinyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.747
AJR24458.1	AJR26474.1	TZ53_12710	TZ53_17465	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.744
AJR24458.1	AJR26516.1	TZ53_12710	TZ53_19595	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Beta-glucanase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.735
AJR25247.1	AJR22786.1	TZ53_17435	TZ53_02375	Ceramide glucosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.775
AJR25247.1	AJR24458.1	TZ53_17435	TZ53_12710	Ceramide glucosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.760
AJR25247.1	AJR25692.1	TZ53_17435	TZ53_20055	Ceramide glucosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Family 2 glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.798
AJR25247.1	AJR26403.1	TZ53_17435	TZ53_14575	Ceramide glucosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Succinyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.782
AJR25247.1	AJR26474.1	TZ53_17435	TZ53_17465	Ceramide glucosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.815
AJR25247.1	AJR26516.1	TZ53_17435	TZ53_19595	Ceramide glucosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Beta-glucanase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.750
AJR25692.1	AJR22786.1	TZ53_20055	TZ53_02375	Family 2 glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.769
AJR25692.1	AJR24458.1	TZ53_20055	TZ53_12710	Family 2 glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.760