(21 nodes) Mixed, incl. Polysaccharide transport, and Bacterial sugar transferase network (Sphingobium sp. YBL2)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AJR22761.1	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (215 aa)
	AJR22762.1	Capsule biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (265 aa)
	AJR22763.1	Capsule biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (387 aa)
	AJR22764.1	Capsule biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (381 aa)
	AJR22771.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (527 aa)
	AJR26107.1	Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (409 aa)
	gmd	GDP-D-mannose dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6- deoxy-D-mannose. (344 aa)
	AJR22776.1	GDP-6-deoxy-D-lyxo-4-hexulose reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (300 aa)
	AJR22980.1	Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (318 aa)
	AJR26149.1	Succinoglycan biosynthesis protein exop; Derived by automated computational analysis using gene prediction method: Protein Homology. (757 aa)
	AJR23017.1	Sugar transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (191 aa)
	AJR23921.1	Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (312 aa)
	AJR23927.1	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (265 aa)
	AJR23945.1	Sugar transferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (463 aa)
	AJR24312.1	Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (432 aa)
	AJR24313.1	Capsule biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (545 aa)
	AJR24314.1	Capsular biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (424 aa)
	AJR25074.1	Polysaccharide export outer membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (236 aa)
	AJR25075.1	Protein tyrosine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (713 aa)
	AJR25597.1	Sugar transferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (463 aa)
	AJR25760.1	Sugar transferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (462 aa)

Your Current Organism:

Sphingobium sp. YBL2

NCBI taxonomy Id: 484429
Other names: S. sp. YBL2

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same PNG format, but at higher resolution

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR22761.1	AJR22762.1	TZ53_02205	TZ53_02210	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Capsule biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
AJR22761.1	AJR22763.1	TZ53_02205	TZ53_02215	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Capsule biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
AJR22761.1	AJR22764.1	TZ53_02205	TZ53_02220	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Capsule biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.942
AJR22761.1	AJR22771.1	TZ53_02205	TZ53_02265	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.657
AJR22761.1	AJR22776.1	TZ53_02205	TZ53_02305	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	GDP-6-deoxy-D-lyxo-4-hexulose reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.402
AJR22761.1	AJR23017.1	TZ53_02205	TZ53_03760	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.565
AJR22761.1	AJR23927.1	TZ53_02205	TZ53_09525	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.565
AJR22761.1	AJR24312.1	TZ53_02205	TZ53_11825	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.804
AJR22761.1	AJR24313.1	TZ53_02205	TZ53_11830	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Capsule biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.961
AJR22761.1	AJR24314.1	TZ53_02205	TZ53_11835	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Capsular biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.816
AJR22761.1	AJR25074.1	TZ53_02205	TZ53_16415	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polysaccharide export outer membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.565
AJR22761.1	AJR25760.1	TZ53_02205	TZ53_20440	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.547
AJR22761.1	AJR26107.1	TZ53_02205	TZ53_02280	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.726
AJR22762.1	AJR22761.1	TZ53_02210	TZ53_02205	Capsule biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
AJR22762.1	AJR22763.1	TZ53_02210	TZ53_02215	Capsule biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Capsule biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
AJR22762.1	AJR22764.1	TZ53_02210	TZ53_02220	Capsule biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Capsule biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.942
AJR22762.1	AJR22771.1	TZ53_02210	TZ53_02265	Capsule biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.482
AJR22762.1	AJR23017.1	TZ53_02210	TZ53_03760	Capsule biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.545
AJR22762.1	AJR23927.1	TZ53_02210	TZ53_09525	Capsule biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.545
AJR22762.1	AJR24312.1	TZ53_02210	TZ53_11825	Capsule biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.827