(14 nodes) Mixed, incl. Bacterial sugar transferase, and Polysaccharide export protein network (Sphingobium sp. YBL2)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AJR22771.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (527 aa)
	AJR26107.1	Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (409 aa)
	gmd	GDP-D-mannose dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6- deoxy-D-mannose. (344 aa)
	AJR22776.1	GDP-6-deoxy-D-lyxo-4-hexulose reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (300 aa)
	AJR22980.1	Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (318 aa)
	AJR26149.1	Succinoglycan biosynthesis protein exop; Derived by automated computational analysis using gene prediction method: Protein Homology. (757 aa)
	AJR23017.1	Sugar transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (191 aa)
	AJR23921.1	Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (312 aa)
	AJR23927.1	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (265 aa)
	AJR23945.1	Sugar transferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (463 aa)
	AJR25074.1	Polysaccharide export outer membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (236 aa)
	AJR25075.1	Protein tyrosine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (713 aa)
	AJR25597.1	Sugar transferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (463 aa)
	AJR25760.1	Sugar transferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (462 aa)

Your Current Organism:

Sphingobium sp. YBL2

NCBI taxonomy Id: 484429
Other names: S. sp. YBL2

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR22771.1	AJR22776.1	TZ53_02265	TZ53_02305	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	GDP-6-deoxy-D-lyxo-4-hexulose reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.520
AJR22771.1	AJR25760.1	TZ53_02265	TZ53_20440	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.471
AJR22771.1	gmd	TZ53_02265	TZ53_02300	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	GDP-D-mannose dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6- deoxy-D-mannose.	0.520
AJR22776.1	AJR22771.1	TZ53_02305	TZ53_02265	GDP-6-deoxy-D-lyxo-4-hexulose reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.520
AJR22776.1	AJR23945.1	TZ53_02305	TZ53_09630	GDP-6-deoxy-D-lyxo-4-hexulose reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.472
AJR22776.1	AJR25075.1	TZ53_02305	TZ53_16420	GDP-6-deoxy-D-lyxo-4-hexulose reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Protein tyrosine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.567
AJR22776.1	AJR25597.1	TZ53_02305	TZ53_19520	GDP-6-deoxy-D-lyxo-4-hexulose reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.472
AJR22776.1	AJR25760.1	TZ53_02305	TZ53_20440	GDP-6-deoxy-D-lyxo-4-hexulose reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.934
AJR22776.1	AJR26107.1	TZ53_02305	TZ53_02280	GDP-6-deoxy-D-lyxo-4-hexulose reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.654
AJR22776.1	AJR26149.1	TZ53_02305	TZ53_03705	GDP-6-deoxy-D-lyxo-4-hexulose reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Succinoglycan biosynthesis protein exop; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.567
AJR22776.1	gmd	TZ53_02305	TZ53_02300	GDP-6-deoxy-D-lyxo-4-hexulose reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	GDP-D-mannose dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6- deoxy-D-mannose.	0.965
AJR22980.1	AJR23017.1	TZ53_03560	TZ53_03760	Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.434
AJR22980.1	AJR23927.1	TZ53_03560	TZ53_09525	Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.434
AJR22980.1	AJR25074.1	TZ53_03560	TZ53_16415	Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polysaccharide export outer membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.434
AJR22980.1	AJR25075.1	TZ53_03560	TZ53_16420	Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Protein tyrosine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.485
AJR22980.1	AJR25760.1	TZ53_03560	TZ53_20440	Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.667
AJR22980.1	AJR26149.1	TZ53_03560	TZ53_03705	Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Succinoglycan biosynthesis protein exop; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.485
AJR23017.1	AJR22980.1	TZ53_03760	TZ53_03560	Sugar transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.434
AJR23017.1	AJR23921.1	TZ53_03760	TZ53_09490	Sugar transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.424
AJR23017.1	AJR23927.1	TZ53_03760	TZ53_09525	Sugar transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.972