(6 nodes) Polysaccharide export protein, and Peptidyl-tyrosine modification network (Sphingobium sp. YBL2)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AJR26149.1	Succinoglycan biosynthesis protein exop; Derived by automated computational analysis using gene prediction method: Protein Homology. (757 aa)
	AJR23017.1	Sugar transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (191 aa)
	AJR23927.1	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (265 aa)
	AJR25074.1	Polysaccharide export outer membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (236 aa)
	AJR25075.1	Protein tyrosine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (713 aa)
	AJR25760.1	Sugar transferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (462 aa)

Your Current Organism:

Sphingobium sp. YBL2

NCBI taxonomy Id: 484429
Other names: S. sp. YBL2

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR23017.1	AJR23927.1	TZ53_03760	TZ53_09525	Sugar transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.972
AJR23017.1	AJR25074.1	TZ53_03760	TZ53_16415	Sugar transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polysaccharide export outer membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.926
AJR23017.1	AJR25075.1	TZ53_03760	TZ53_16420	Sugar transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Protein tyrosine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.949
AJR23017.1	AJR25760.1	TZ53_03760	TZ53_20440	Sugar transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.870
AJR23017.1	AJR26149.1	TZ53_03760	TZ53_03705	Sugar transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Succinoglycan biosynthesis protein exop; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.962
AJR23927.1	AJR23017.1	TZ53_09525	TZ53_03760	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.972
AJR23927.1	AJR25074.1	TZ53_09525	TZ53_16415	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polysaccharide export outer membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.976
AJR23927.1	AJR25075.1	TZ53_09525	TZ53_16420	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Protein tyrosine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.963
AJR23927.1	AJR25760.1	TZ53_09525	TZ53_20440	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.869
AJR23927.1	AJR26149.1	TZ53_09525	TZ53_03705	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Succinoglycan biosynthesis protein exop; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.960
AJR25074.1	AJR23017.1	TZ53_16415	TZ53_03760	Polysaccharide export outer membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.926
AJR25074.1	AJR23927.1	TZ53_16415	TZ53_09525	Polysaccharide export outer membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.976
AJR25074.1	AJR25075.1	TZ53_16415	TZ53_16420	Polysaccharide export outer membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Protein tyrosine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.994
AJR25074.1	AJR25760.1	TZ53_16415	TZ53_20440	Polysaccharide export outer membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.884
AJR25074.1	AJR26149.1	TZ53_16415	TZ53_03705	Polysaccharide export outer membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Succinoglycan biosynthesis protein exop; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.963
AJR25075.1	AJR23017.1	TZ53_16420	TZ53_03760	Protein tyrosine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.949
AJR25075.1	AJR23927.1	TZ53_16420	TZ53_09525	Protein tyrosine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.963
AJR25075.1	AJR25074.1	TZ53_16420	TZ53_16415	Protein tyrosine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polysaccharide export outer membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.994
AJR25075.1	AJR25760.1	TZ53_16420	TZ53_20440	Protein tyrosine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.995
AJR25075.1	AJR26149.1	TZ53_16420	TZ53_03705	Protein tyrosine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Succinoglycan biosynthesis protein exop; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.473