(12 nodes) Mixed, incl. TadE-like, and Type II secretion system (T2SS), protein F network (Sphingobium sp. YBL2)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AJR24846.1	Pilus assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (54 aa)
	AJR25042.1	Pilus assembly protein CpaB; Derived by automated computational analysis using gene prediction method: Protein Homology. (295 aa)
	AJR25043.1	Pilus assembly protein CpaC; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial secretin family. (493 aa)
	AJR25044.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (93 aa)
	AJR25045.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (525 aa)
	AJR25046.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (175 aa)
	AJR25047.1	Pilus assembly protein TadE; Derived by automated computational analysis using gene prediction method: Protein Homology. (205 aa)
	AJR25048.1	Pilus assembly protein CpaE; Derived by automated computational analysis using gene prediction method: Protein Homology. (411 aa)
	AJR25049.1	Type II secretion system protein E; Derived by automated computational analysis using gene prediction method: Protein Homology. (451 aa)
	AJR25050.1	Secretion system protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (333 aa)
	AJR25051.1	Secretion system protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (322 aa)
	AJR25054.1	Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (174 aa)

Your Current Organism:

Sphingobium sp. YBL2

NCBI taxonomy Id: 484429
Other names: S. sp. YBL2

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same PNG format, but at higher resolution

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR24846.1	AJR25042.1	TZ53_15040	TZ53_16235	Pilus assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pilus assembly protein CpaB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.813
AJR24846.1	AJR25043.1	TZ53_15040	TZ53_16240	Pilus assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pilus assembly protein CpaC; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial secretin family.	0.711
AJR24846.1	AJR25047.1	TZ53_15040	TZ53_16260	Pilus assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pilus assembly protein TadE; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.467
AJR24846.1	AJR25048.1	TZ53_15040	TZ53_16265	Pilus assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pilus assembly protein CpaE; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.799
AJR24846.1	AJR25049.1	TZ53_15040	TZ53_16270	Pilus assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type II secretion system protein E; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.570
AJR24846.1	AJR25050.1	TZ53_15040	TZ53_16275	Pilus assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Secretion system protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.729
AJR24846.1	AJR25051.1	TZ53_15040	TZ53_16280	Pilus assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Secretion system protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.717
AJR24846.1	AJR25054.1	TZ53_15040	TZ53_16295	Pilus assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.848
AJR25042.1	AJR24846.1	TZ53_16235	TZ53_15040	Pilus assembly protein CpaB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pilus assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.813
AJR25042.1	AJR25043.1	TZ53_16235	TZ53_16240	Pilus assembly protein CpaB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pilus assembly protein CpaC; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial secretin family.	0.971
AJR25042.1	AJR25044.1	TZ53_16235	TZ53_16245	Pilus assembly protein CpaB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.733
AJR25042.1	AJR25045.1	TZ53_16235	TZ53_16250	Pilus assembly protein CpaB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.789
AJR25042.1	AJR25046.1	TZ53_16235	TZ53_16255	Pilus assembly protein CpaB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.802
AJR25042.1	AJR25047.1	TZ53_16235	TZ53_16260	Pilus assembly protein CpaB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pilus assembly protein TadE; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.861
AJR25042.1	AJR25048.1	TZ53_16235	TZ53_16265	Pilus assembly protein CpaB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pilus assembly protein CpaE; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.962
AJR25042.1	AJR25049.1	TZ53_16235	TZ53_16270	Pilus assembly protein CpaB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type II secretion system protein E; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.951
AJR25042.1	AJR25050.1	TZ53_16235	TZ53_16275	Pilus assembly protein CpaB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Secretion system protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.960
AJR25042.1	AJR25051.1	TZ53_16235	TZ53_16280	Pilus assembly protein CpaB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Secretion system protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.957
AJR25042.1	AJR25054.1	TZ53_16235	TZ53_16295	Pilus assembly protein CpaB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.896
AJR25043.1	AJR24846.1	TZ53_16240	TZ53_15040	Pilus assembly protein CpaC; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial secretin family.	Pilus assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.711