5 items (Sphingobium sp. YBL2) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AJR24796.1	Pilus assembly protein TadC; Derived by automated computational analysis using gene prediction method: Protein Homology. (330 aa)
	AJR24797.1	Pilus assembly protein TadB; Derived by automated computational analysis using gene prediction method: Protein Homology. (332 aa)
	AJR24798.1	Pilus assembly protein CpaE; Derived by automated computational analysis using gene prediction method: Protein Homology. (428 aa)
	AJR24800.1	Secretion system protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial secretin family. (509 aa)
	AJR26411.1	Pilus assembly protein CpaB; Derived by automated computational analysis using gene prediction method: Protein Homology. (339 aa)

Your Current Organism:

Sphingobium sp. YBL2

NCBI taxonomy Id: 484429
Other names: S. sp. YBL2

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR24796.1	AJR24797.1	TZ53_14765	TZ53_14770	Pilus assembly protein TadC; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pilus assembly protein TadB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.978
AJR24796.1	AJR24798.1	TZ53_14765	TZ53_14775	Pilus assembly protein TadC; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pilus assembly protein CpaE; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.951
AJR24796.1	AJR24800.1	TZ53_14765	TZ53_14785	Pilus assembly protein TadC; Derived by automated computational analysis using gene prediction method: Protein Homology.	Secretion system protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial secretin family.	0.941
AJR24796.1	AJR26411.1	TZ53_14765	TZ53_14790	Pilus assembly protein TadC; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pilus assembly protein CpaB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.951
AJR24797.1	AJR24796.1	TZ53_14770	TZ53_14765	Pilus assembly protein TadB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pilus assembly protein TadC; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.978
AJR24797.1	AJR24798.1	TZ53_14770	TZ53_14775	Pilus assembly protein TadB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pilus assembly protein CpaE; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.955
AJR24797.1	AJR24800.1	TZ53_14770	TZ53_14785	Pilus assembly protein TadB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Secretion system protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial secretin family.	0.920
AJR24797.1	AJR26411.1	TZ53_14770	TZ53_14790	Pilus assembly protein TadB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pilus assembly protein CpaB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.948
AJR24798.1	AJR24796.1	TZ53_14775	TZ53_14765	Pilus assembly protein CpaE; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pilus assembly protein TadC; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.951
AJR24798.1	AJR24797.1	TZ53_14775	TZ53_14770	Pilus assembly protein CpaE; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pilus assembly protein TadB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.955
AJR24798.1	AJR24800.1	TZ53_14775	TZ53_14785	Pilus assembly protein CpaE; Derived by automated computational analysis using gene prediction method: Protein Homology.	Secretion system protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial secretin family.	0.963
AJR24798.1	AJR26411.1	TZ53_14775	TZ53_14790	Pilus assembly protein CpaE; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pilus assembly protein CpaB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.971
AJR24800.1	AJR24796.1	TZ53_14785	TZ53_14765	Secretion system protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial secretin family.	Pilus assembly protein TadC; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.941
AJR24800.1	AJR24797.1	TZ53_14785	TZ53_14770	Secretion system protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial secretin family.	Pilus assembly protein TadB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.920
AJR24800.1	AJR24798.1	TZ53_14785	TZ53_14775	Secretion system protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial secretin family.	Pilus assembly protein CpaE; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.963
AJR24800.1	AJR26411.1	TZ53_14785	TZ53_14790	Secretion system protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial secretin family.	Pilus assembly protein CpaB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.973
AJR26411.1	AJR24796.1	TZ53_14790	TZ53_14765	Pilus assembly protein CpaB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pilus assembly protein TadC; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.951
AJR26411.1	AJR24797.1	TZ53_14790	TZ53_14770	Pilus assembly protein CpaB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pilus assembly protein TadB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.948
AJR26411.1	AJR24798.1	TZ53_14790	TZ53_14775	Pilus assembly protein CpaB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pilus assembly protein CpaE; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.971
AJR26411.1	AJR24800.1	TZ53_14790	TZ53_14785	Pilus assembly protein CpaB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Secretion system protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial secretin family.	0.973