(46 nodes) Mixed, incl. Sulfur metabolism, and Monooxygenase network (Sphingobium sp. YBL2)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AJR22416.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (160 aa)
	AJR22417.1	Nitrilase; Derived by automated computational analysis using gene prediction method: Protein Homology. (276 aa)
	AJR22418.1	Glutaredoxin; Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins. (85 aa)
	AJR26055.1	Methyltransferase type 11; Derived by automated computational analysis using gene prediction method: Protein Homology. (282 aa)
	AJR22420.1	Monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (371 aa)
	AJR22421.1	Ribulose-phosphate 3-epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (247 aa)
	AJR22422.1	Nitrilotriacetate monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (452 aa)
	AJR22423.1	Monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (352 aa)
	AJR22424.1	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (593 aa)
	AJR22425.1	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (619 aa)
	AJR23217.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (344 aa)
	AJR26179.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (292 aa)
	AJR23251.1	Taurine catabolism dioxygenase TauD; Derived by automated computational analysis using gene prediction method: Protein Homology. (323 aa)
	AJR23281.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (286 aa)
	AJR26197.1	Taurine catabolism dioxygenase TauD; Derived by automated computational analysis using gene prediction method: Protein Homology. (327 aa)
	AJR26233.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (305 aa)
	AJR23495.1	Catalyzes the hydrolysis of allophanate; Derived by automated computational analysis using gene prediction method: Protein Homology. (594 aa)
	AJR23496.1	Urea carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1198 aa)
	AJR23497.1	Urea carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (211 aa)
	AJR23498.1	Urea carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (273 aa)
	AJR23499.1	CopG family transcriptional regulator; Transcriptional regulator. (158 aa)
	AJR23500.1	Lauroyl acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (268 aa)
	AJR23501.1	Lipid kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (271 aa)
	AJR23502.1	Lipid kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (360 aa)
	AJR23819.1	Aliphatic sulfonate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (328 aa)
	AJR23828.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (272 aa)
	ssuB	Sulfonate ABC transporter ATP-binding protein; Part of the ABC transporter complex SsuABC involved in aliphatic sulfonates import. Responsible for energy coupling to the transport system. (266 aa)
	AJR23830.1	Cysteine dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (208 aa)
	AJR23831.1	Thiosulfate sulfurtransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (420 aa)
	AJR23832.1	Alkanesulfonate monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (362 aa)
	AJR23833.1	Aliphatic sulfonate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (319 aa)
	AJR23866.1	4Fe-4S ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology. (130 aa)
	AJR23867.1	Fumarate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (530 aa)
	AJR23868.1	Monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (447 aa)
	AJR23870.1	Monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (445 aa)
	AJR23871.1	Taurine catabolism dioxygenase TauD; Derived by automated computational analysis using gene prediction method: Protein Homology. (287 aa)
	AJR26283.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (322 aa)
	AJR25007.1	Monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (348 aa)
	AJR25008.1	Nitrate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (350 aa)
	AJR25009.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (253 aa)
	AJR25010.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (256 aa)
	AJR25011.1	Sulfonate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (284 aa)
	AJR25013.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (318 aa)
	AJR25014.1	Alkanesulfonate monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (385 aa)
	AJR25106.1	Monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (440 aa)
	AJR25401.1	FMN reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (184 aa)

Your Current Organism:

Sphingobium sp. YBL2

NCBI taxonomy Id: 484429
Other names: S. sp. YBL2

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR22416.1	AJR22417.1	TZ53_00055	TZ53_00060	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nitrilase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.861
AJR22416.1	AJR22418.1	TZ53_00055	TZ53_00065	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutaredoxin; Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins.	0.861
AJR22416.1	AJR26055.1	TZ53_00055	TZ53_00075	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Methyltransferase type 11; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.666
AJR22417.1	AJR22416.1	TZ53_00060	TZ53_00055	Nitrilase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.861
AJR22417.1	AJR22418.1	TZ53_00060	TZ53_00065	Nitrilase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutaredoxin; Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins.	0.901
AJR22417.1	AJR26055.1	TZ53_00060	TZ53_00075	Nitrilase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Methyltransferase type 11; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.674
AJR22418.1	AJR22416.1	TZ53_00065	TZ53_00055	Glutaredoxin; Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.861
AJR22418.1	AJR22417.1	TZ53_00065	TZ53_00060	Glutaredoxin; Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins.	Nitrilase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.901
AJR22418.1	AJR23831.1	TZ53_00065	TZ53_08945	Glutaredoxin; Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins.	Thiosulfate sulfurtransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.557
AJR22418.1	AJR26055.1	TZ53_00065	TZ53_00075	Glutaredoxin; Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins.	Methyltransferase type 11; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.680
AJR22420.1	AJR22421.1	TZ53_00080	TZ53_00085	Monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ribulose-phosphate 3-epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.948
AJR22420.1	AJR22422.1	TZ53_00080	TZ53_00090	Monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nitrilotriacetate monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.789
AJR22420.1	AJR22423.1	TZ53_00080	TZ53_00095	Monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.434
AJR22420.1	AJR22424.1	TZ53_00080	TZ53_00100	Monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.544
AJR22420.1	AJR22425.1	TZ53_00080	TZ53_00105	Monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.507
AJR22420.1	AJR23500.1	TZ53_00080	TZ53_06920	Monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Lauroyl acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.453
AJR22420.1	AJR23501.1	TZ53_00080	TZ53_06925	Monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Lipid kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.514
AJR22420.1	AJR23828.1	TZ53_00080	TZ53_08930	Monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.549
AJR22420.1	AJR23832.1	TZ53_00080	TZ53_08950	Monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alkanesulfonate monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.597
AJR22420.1	AJR23868.1	TZ53_00080	TZ53_09155	Monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.638