7 items (Sphingobium sp. YBL2) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AJR23495.1	Catalyzes the hydrolysis of allophanate; Derived by automated computational analysis using gene prediction method: Protein Homology. (594 aa)
	AJR23496.1	Urea carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1198 aa)
	AJR23497.1	Urea carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (211 aa)
	AJR23498.1	Urea carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (273 aa)
	AJR23500.1	Lauroyl acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (268 aa)
	AJR23501.1	Lipid kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (271 aa)
	AJR23502.1	Lipid kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (360 aa)

Your Current Organism:

Sphingobium sp. YBL2

NCBI taxonomy Id: 484429
Other names: S. sp. YBL2

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR23495.1	AJR23496.1	TZ53_06895	TZ53_06900	Catalyzes the hydrolysis of allophanate; Derived by automated computational analysis using gene prediction method: Protein Homology.	Urea carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
AJR23495.1	AJR23497.1	TZ53_06895	TZ53_06905	Catalyzes the hydrolysis of allophanate; Derived by automated computational analysis using gene prediction method: Protein Homology.	Urea carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.984
AJR23495.1	AJR23498.1	TZ53_06895	TZ53_06910	Catalyzes the hydrolysis of allophanate; Derived by automated computational analysis using gene prediction method: Protein Homology.	Urea carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.982
AJR23495.1	AJR23500.1	TZ53_06895	TZ53_06920	Catalyzes the hydrolysis of allophanate; Derived by automated computational analysis using gene prediction method: Protein Homology.	Lauroyl acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.939
AJR23495.1	AJR23501.1	TZ53_06895	TZ53_06925	Catalyzes the hydrolysis of allophanate; Derived by automated computational analysis using gene prediction method: Protein Homology.	Lipid kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.950
AJR23495.1	AJR23502.1	TZ53_06895	TZ53_06930	Catalyzes the hydrolysis of allophanate; Derived by automated computational analysis using gene prediction method: Protein Homology.	Lipid kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.937
AJR23496.1	AJR23495.1	TZ53_06900	TZ53_06895	Urea carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Catalyzes the hydrolysis of allophanate; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
AJR23496.1	AJR23497.1	TZ53_06900	TZ53_06905	Urea carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Urea carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.983
AJR23496.1	AJR23498.1	TZ53_06900	TZ53_06910	Urea carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Urea carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.980
AJR23496.1	AJR23500.1	TZ53_06900	TZ53_06920	Urea carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Lauroyl acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.968
AJR23496.1	AJR23501.1	TZ53_06900	TZ53_06925	Urea carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Lipid kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.937
AJR23496.1	AJR23502.1	TZ53_06900	TZ53_06930	Urea carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Lipid kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.942
AJR23497.1	AJR23495.1	TZ53_06905	TZ53_06895	Urea carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Catalyzes the hydrolysis of allophanate; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.984
AJR23497.1	AJR23496.1	TZ53_06905	TZ53_06900	Urea carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Urea carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.983
AJR23497.1	AJR23498.1	TZ53_06905	TZ53_06910	Urea carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Urea carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.872
AJR23497.1	AJR23500.1	TZ53_06905	TZ53_06920	Urea carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Lauroyl acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.928
AJR23497.1	AJR23501.1	TZ53_06905	TZ53_06925	Urea carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Lipid kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.947
AJR23497.1	AJR23502.1	TZ53_06905	TZ53_06930	Urea carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Lipid kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.931
AJR23498.1	AJR23495.1	TZ53_06910	TZ53_06895	Urea carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Catalyzes the hydrolysis of allophanate; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.982
AJR23498.1	AJR23496.1	TZ53_06910	TZ53_06900	Urea carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Urea carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.980