(13 nodes) Nitrogen metabolism network (Sphingobium sp. YBL2)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AJR22614.1	Nitrate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily. (873 aa)
	AJR26081.1	Nitrite reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (111 aa)
	AJR26082.1	Nitrite reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family. (843 aa)
	AJR22615.1	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (418 aa)
	AJR22616.1	Nitrate transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (400 aa)
	AJR22617.1	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology. (192 aa)
	AJR24320.1	NagC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (559 aa)
	AJR26437.1	2-nitropropane dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (467 aa)
	AJR25451.1	Bicarbonate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (426 aa)
	AJR25452.1	Bicarbonate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (324 aa)
	AJR25453.1	Nitrate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (267 aa)
	AJR25626.1	2-nitropropane dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (350 aa)
	AJR25705.1	2-nitropropane dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (310 aa)

Your Current Organism:

Sphingobium sp. YBL2

NCBI taxonomy Id: 484429
Other names: S. sp. YBL2

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR22614.1	AJR22615.1	TZ53_01240	TZ53_01255	Nitrate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.977
AJR22614.1	AJR22616.1	TZ53_01240	TZ53_01260	Nitrate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.	Nitrate transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.857
AJR22614.1	AJR22617.1	TZ53_01240	TZ53_01265	Nitrate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.869
AJR22614.1	AJR24320.1	TZ53_01240	TZ53_11865	Nitrate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.	NagC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.934
AJR22614.1	AJR25451.1	TZ53_01240	TZ53_18660	Nitrate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.	Bicarbonate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.980
AJR22614.1	AJR25452.1	TZ53_01240	TZ53_18665	Nitrate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.	Bicarbonate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.951
AJR22614.1	AJR25453.1	TZ53_01240	TZ53_18670	Nitrate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.	Nitrate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.969
AJR22614.1	AJR25626.1	TZ53_01240	TZ53_19685	Nitrate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.	2-nitropropane dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.900
AJR22614.1	AJR25705.1	TZ53_01240	TZ53_20130	Nitrate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.	2-nitropropane dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.900
AJR22614.1	AJR26081.1	TZ53_01240	TZ53_01245	Nitrate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.	Nitrite reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.994
AJR22614.1	AJR26082.1	TZ53_01240	TZ53_01250	Nitrate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.	Nitrite reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.	0.996
AJR22614.1	AJR26437.1	TZ53_01240	TZ53_15770	Nitrate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.	2-nitropropane dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.900
AJR22615.1	AJR22614.1	TZ53_01255	TZ53_01240	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nitrate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.	0.977
AJR22615.1	AJR22616.1	TZ53_01255	TZ53_01260	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nitrate transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.673
AJR22615.1	AJR22617.1	TZ53_01255	TZ53_01265	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.728
AJR22615.1	AJR24320.1	TZ53_01255	TZ53_11865	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	NagC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.966
AJR22615.1	AJR25626.1	TZ53_01255	TZ53_19685	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	2-nitropropane dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.914
AJR22615.1	AJR25705.1	TZ53_01255	TZ53_20130	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	2-nitropropane dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.915
AJR22615.1	AJR26081.1	TZ53_01255	TZ53_01245	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nitrite reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.988
AJR22615.1	AJR26082.1	TZ53_01255	TZ53_01250	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nitrite reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.	0.983