(6 nodes) Mixed, incl. Vanillate O-demethylase oxygenase-like, C-terminal catalytic domain, and Flavin reductase like domain network (Sphingobium sp. YBL2)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AJR23118.1	Monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (166 aa)
	AJR23839.1	Rieske (2Fe-2S) protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (357 aa)
	AJR24767.1	Alkane 1-monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (343 aa)
	AJR25426.1	Oxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (357 aa)
	AJR25427.1	(2Fe-2S)-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (312 aa)
	AJR25428.1	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (221 aa)

Your Current Organism:

Sphingobium sp. YBL2

NCBI taxonomy Id: 484429
Other names: S. sp. YBL2

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR23118.1	AJR23839.1	TZ53_04400	TZ53_08990	Monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Rieske (2Fe-2S) protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.504
AJR23839.1	AJR23118.1	TZ53_08990	TZ53_04400	Rieske (2Fe-2S) protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.504
AJR25426.1	AJR25427.1	TZ53_18495	TZ53_18500	Oxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	(2Fe-2S)-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.865
AJR25426.1	AJR25428.1	TZ53_18495	TZ53_18505	Oxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.545
AJR25427.1	AJR25426.1	TZ53_18500	TZ53_18495	(2Fe-2S)-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Oxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.865
AJR25427.1	AJR25428.1	TZ53_18500	TZ53_18505	(2Fe-2S)-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.557
AJR25428.1	AJR25426.1	TZ53_18505	TZ53_18495	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Oxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.545
AJR25428.1	AJR25427.1	TZ53_18505	TZ53_18500	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	(2Fe-2S)-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.557