35 items (Sphingobium sp. YBL2) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AJR22487.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (805 aa)
	AJR22497.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (746 aa)
	AJR22629.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (874 aa)
	AJR26147.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (909 aa)
	AJR22974.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (1004 aa)
	AJR23079.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (962 aa)
	AJR23229.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (976 aa)
	AJR23257.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (857 aa)
	AJR23294.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (773 aa)
	AJR23310.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (782 aa)
	AJR23420.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (711 aa)
	AJR23422.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (763 aa)
	AJR23503.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (1034 aa)
	AJR23563.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (746 aa)
	AJR23575.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (743 aa)
	AJR23587.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (988 aa)
	AJR23612.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (968 aa)
	AJR23661.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (801 aa)
	AJR23778.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (730 aa)
	AJR23834.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (860 aa)
	AJR23851.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (849 aa)
	AJR23869.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (857 aa)
	AJR23872.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (836 aa)
	AJR26306.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (1026 aa)
	AJR23982.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (814 aa)
	AJR26328.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (762 aa)
	AJR24297.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (704 aa)
	AJR24616.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (752 aa)
	AJR24950.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (928 aa)
	AJR25015.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (780 aa)
	AJR25340.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (810 aa)
	AJR25420.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (793 aa)
	AJR25446.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (798 aa)
	AJR26496.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (781 aa)
	AJR26008.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (874 aa)

Your Current Organism:

Sphingobium sp. YBL2

NCBI taxonomy Id: 484429
Other names: S. sp. YBL2

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR22487.1	AJR22629.1	TZ53_00440	TZ53_01330	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.644
AJR22487.1	AJR22974.1	TZ53_00440	TZ53_03530	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.542
AJR22487.1	AJR23079.1	TZ53_00440	TZ53_04165	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.746
AJR22487.1	AJR23229.1	TZ53_00440	TZ53_05065	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.788
AJR22487.1	AJR23503.1	TZ53_00440	TZ53_06945	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.753
AJR22487.1	AJR23587.1	TZ53_00440	TZ53_07545	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.763
AJR22487.1	AJR23612.1	TZ53_00440	TZ53_07675	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.731
AJR22487.1	AJR23834.1	TZ53_00440	TZ53_08960	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.700
AJR22487.1	AJR23869.1	TZ53_00440	TZ53_09170	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.749
AJR22487.1	AJR23872.1	TZ53_00440	TZ53_09195	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.710
AJR22487.1	AJR23982.1	TZ53_00440	TZ53_09880	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.407
AJR22487.1	AJR24297.1	TZ53_00440	TZ53_11735	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.611
AJR22487.1	AJR24616.1	TZ53_00440	TZ53_13665	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.410
AJR22487.1	AJR24950.1	TZ53_00440	TZ53_15685	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.692
AJR22487.1	AJR26008.1	TZ53_00440	TZ53_21965	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.712
AJR22487.1	AJR26147.1	TZ53_00440	TZ53_03520	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.748
AJR22487.1	AJR26306.1	TZ53_00440	TZ53_09855	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.511
AJR22497.1	AJR22629.1	TZ53_00525	TZ53_01330	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.596
AJR22497.1	AJR22974.1	TZ53_00525	TZ53_03530	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.618
AJR22497.1	AJR23079.1	TZ53_00525	TZ53_04165	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.684