(13 nodes) FecR protein, and RNA polymerase sigma-70 like network (Sphingobium sp. YBL2)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AJR22758.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (335 aa)
	AJR22759.1	RNA polymerase sigma-70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. (193 aa)
	AJR26209.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (123 aa)
	AJR23352.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (340 aa)
	AJR23387.1	Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (394 aa)
	AJR23388.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (701 aa)
	AJR26221.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (691 aa)
	AJR24690.1	RNA polymerase subunit sigma-70; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. (172 aa)
	AJR24691.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (315 aa)
	AJR26390.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (763 aa)
	AJR26399.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (128 aa)
	AJR25284.1	Sigma-70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. (188 aa)
	AJR25639.1	Regulatory protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (341 aa)

Your Current Organism:

Sphingobium sp. YBL2

NCBI taxonomy Id: 484429
Other names: S. sp. YBL2

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR22758.1	AJR22759.1	TZ53_02190	TZ53_02195	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA polymerase sigma-70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family.	0.966
AJR22758.1	AJR23387.1	TZ53_02190	TZ53_06180	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.617
AJR22758.1	AJR23388.1	TZ53_02190	TZ53_06185	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.661
AJR22758.1	AJR24690.1	TZ53_02190	TZ53_14090	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA polymerase subunit sigma-70; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	0.845
AJR22758.1	AJR25284.1	TZ53_02190	TZ53_17685	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sigma-70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	0.855
AJR22758.1	AJR26209.1	TZ53_02190	TZ53_05940	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.817
AJR22758.1	AJR26221.1	TZ53_02190	TZ53_06365	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.690
AJR22758.1	AJR26390.1	TZ53_02190	TZ53_14100	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.786
AJR22758.1	AJR26399.1	TZ53_02190	TZ53_14420	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.855
AJR22759.1	AJR22758.1	TZ53_02195	TZ53_02190	RNA polymerase sigma-70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.966
AJR22759.1	AJR23352.1	TZ53_02195	TZ53_05945	RNA polymerase sigma-70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.858
AJR22759.1	AJR23387.1	TZ53_02195	TZ53_06180	RNA polymerase sigma-70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family.	Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.466
AJR22759.1	AJR23388.1	TZ53_02195	TZ53_06185	RNA polymerase sigma-70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.434
AJR22759.1	AJR24691.1	TZ53_02195	TZ53_14095	RNA polymerase sigma-70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.849
AJR22759.1	AJR25639.1	TZ53_02195	TZ53_19755	RNA polymerase sigma-70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family.	Regulatory protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.855
AJR22759.1	AJR26209.1	TZ53_02195	TZ53_05940	RNA polymerase sigma-70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.748
AJR22759.1	AJR26221.1	TZ53_02195	TZ53_06365	RNA polymerase sigma-70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.431
AJR22759.1	AJR26390.1	TZ53_02195	TZ53_14100	RNA polymerase sigma-70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.655
AJR23352.1	AJR22759.1	TZ53_05945	TZ53_02195	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA polymerase sigma-70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family.	0.858
AJR23352.1	AJR23387.1	TZ53_05945	TZ53_06180	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.572