5 items (Sphingobium sp. YBL2) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AJR24448.1	Energy transducer TonB; Derived by automated computational analysis using gene prediction method: Protein Homology. (219 aa)
	AJR24449.1	Flagellar motor protein MotA; Derived by automated computational analysis using gene prediction method: Protein Homology. (250 aa)
	AJR24450.1	Biopolymer transporter ExbD; Derived by automated computational analysis using gene prediction method: Protein Homology. (162 aa)
	AJR24451.1	Biopolymer transporter ExbD; Derived by automated computational analysis using gene prediction method: Protein Homology. (140 aa)
	AJR24634.1	Energy transducer TonB; Derived by automated computational analysis using gene prediction method: Protein Homology. (254 aa)

Your Current Organism:

Sphingobium sp. YBL2

NCBI taxonomy Id: 484429
Other names: S. sp. YBL2

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR24448.1	AJR24449.1	TZ53_12660	TZ53_12665	Energy transducer TonB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Flagellar motor protein MotA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.979
AJR24448.1	AJR24450.1	TZ53_12660	TZ53_12670	Energy transducer TonB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Biopolymer transporter ExbD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.926
AJR24448.1	AJR24451.1	TZ53_12660	TZ53_12675	Energy transducer TonB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Biopolymer transporter ExbD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.897
AJR24449.1	AJR24448.1	TZ53_12665	TZ53_12660	Flagellar motor protein MotA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Energy transducer TonB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.979
AJR24449.1	AJR24450.1	TZ53_12665	TZ53_12670	Flagellar motor protein MotA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Biopolymer transporter ExbD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.988
AJR24449.1	AJR24451.1	TZ53_12665	TZ53_12675	Flagellar motor protein MotA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Biopolymer transporter ExbD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.979
AJR24449.1	AJR24634.1	TZ53_12665	TZ53_13755	Flagellar motor protein MotA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Energy transducer TonB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.886
AJR24450.1	AJR24448.1	TZ53_12670	TZ53_12660	Biopolymer transporter ExbD; Derived by automated computational analysis using gene prediction method: Protein Homology.	Energy transducer TonB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.926
AJR24450.1	AJR24449.1	TZ53_12670	TZ53_12665	Biopolymer transporter ExbD; Derived by automated computational analysis using gene prediction method: Protein Homology.	Flagellar motor protein MotA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.988
AJR24450.1	AJR24451.1	TZ53_12670	TZ53_12675	Biopolymer transporter ExbD; Derived by automated computational analysis using gene prediction method: Protein Homology.	Biopolymer transporter ExbD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.711
AJR24450.1	AJR24634.1	TZ53_12670	TZ53_13755	Biopolymer transporter ExbD; Derived by automated computational analysis using gene prediction method: Protein Homology.	Energy transducer TonB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.843
AJR24451.1	AJR24448.1	TZ53_12675	TZ53_12660	Biopolymer transporter ExbD; Derived by automated computational analysis using gene prediction method: Protein Homology.	Energy transducer TonB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.897
AJR24451.1	AJR24449.1	TZ53_12675	TZ53_12665	Biopolymer transporter ExbD; Derived by automated computational analysis using gene prediction method: Protein Homology.	Flagellar motor protein MotA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.979
AJR24451.1	AJR24450.1	TZ53_12675	TZ53_12670	Biopolymer transporter ExbD; Derived by automated computational analysis using gene prediction method: Protein Homology.	Biopolymer transporter ExbD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.711
AJR24451.1	AJR24634.1	TZ53_12675	TZ53_13755	Biopolymer transporter ExbD; Derived by automated computational analysis using gene prediction method: Protein Homology.	Energy transducer TonB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.869
AJR24634.1	AJR24449.1	TZ53_13755	TZ53_12665	Energy transducer TonB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Flagellar motor protein MotA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.886
AJR24634.1	AJR24450.1	TZ53_13755	TZ53_12670	Energy transducer TonB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Biopolymer transporter ExbD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.843
AJR24634.1	AJR24451.1	TZ53_13755	TZ53_12675	Energy transducer TonB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Biopolymer transporter ExbD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.869