(5 nodes) Mixed, incl. TonB-dependent siderophore receptor, and PepSY-associated TM protein network (Sphingobium sp. YBL2)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AJR22711.1	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (395 aa)
	AJR22723.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (720 aa)
	AJR22724.1	Iron transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (346 aa)
	AJR23452.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (809 aa)
	AJR26234.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (801 aa)

Your Current Organism:

Sphingobium sp. YBL2

NCBI taxonomy Id: 484429
Other names: S. sp. YBL2

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same PNG format, but at higher resolution

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR22711.1	AJR22723.1	TZ53_01835	TZ53_01920	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.574
AJR22711.1	AJR23452.1	TZ53_01835	TZ53_06650	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.472
AJR22723.1	AJR22711.1	TZ53_01920	TZ53_01835	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.574
AJR22723.1	AJR22724.1	TZ53_01920	TZ53_01925	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	Iron transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.870
AJR22723.1	AJR26234.1	TZ53_01920	TZ53_06935	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.628
AJR22724.1	AJR22723.1	TZ53_01925	TZ53_01920	Iron transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.870
AJR22724.1	AJR26234.1	TZ53_01925	TZ53_06935	Iron transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.545
AJR23452.1	AJR22711.1	TZ53_06650	TZ53_01835	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.472
AJR26234.1	AJR22723.1	TZ53_06935	TZ53_01920	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.628
AJR26234.1	AJR22724.1	TZ53_06935	TZ53_01925	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	Iron transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.545