6 items (Sphingobium sp. YBL2) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AJR22746.1	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (306 aa)
	AJR22756.1	Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (705 aa)
	AJR22757.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (856 aa)
	AJR23672.1	Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (360 aa)
	AJR23673.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (716 aa)
	AJR24743.1	Nucleotidyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (306 aa)

Your Current Organism:

Sphingobium sp. YBL2

NCBI taxonomy Id: 484429
Other names: S. sp. YBL2

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR22746.1	AJR22757.1	TZ53_02085	TZ53_02185	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.509
AJR22746.1	AJR23673.1	TZ53_02085	TZ53_08050	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.528
AJR22756.1	AJR22757.1	TZ53_02180	TZ53_02185	Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.865
AJR22757.1	AJR22746.1	TZ53_02185	TZ53_02085	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.509
AJR22757.1	AJR22756.1	TZ53_02185	TZ53_02180	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.865
AJR22757.1	AJR23672.1	TZ53_02185	TZ53_08045	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.497
AJR22757.1	AJR23673.1	TZ53_02185	TZ53_08050	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.533
AJR22757.1	AJR24743.1	TZ53_02185	TZ53_14430	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nucleotidyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.623
AJR23672.1	AJR22757.1	TZ53_08045	TZ53_02185	Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.497
AJR23672.1	AJR23673.1	TZ53_08045	TZ53_08050	Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.946
AJR23672.1	AJR24743.1	TZ53_08045	TZ53_14430	Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nucleotidyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.580
AJR23673.1	AJR22746.1	TZ53_08050	TZ53_02085	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.528
AJR23673.1	AJR22757.1	TZ53_08050	TZ53_02185	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.533
AJR23673.1	AJR23672.1	TZ53_08050	TZ53_08045	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.946
AJR23673.1	AJR24743.1	TZ53_08050	TZ53_14430	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nucleotidyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.631
AJR24743.1	AJR22757.1	TZ53_14430	TZ53_02185	Nucleotidyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.623
AJR24743.1	AJR23672.1	TZ53_14430	TZ53_08045	Nucleotidyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.580
AJR24743.1	AJR23673.1	TZ53_14430	TZ53_08050	Nucleotidyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.631