(12 nodes) Mostly uncharacterized, incl. GtrA-like protein, and Haem oxygenase-like, multi-helical network (Sphingobium sp. YBL2)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AJR26302.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (971 aa)
	AJR23967.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (989 aa)
	AJR24034.1	AsmA family protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (731 aa)
	AJR26342.1	Heme oxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (177 aa)
	AJR24493.1	Polysaccharide biosynthesis protein GtrA; Derived by automated computational analysis using gene prediction method: Protein Homology. (138 aa)
	AJR24494.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (633 aa)
	AJR24693.1	Polysaccharide deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (245 aa)
	AJR26391.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (294 aa)
	AJR24694.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (166 aa)
	AJR24695.1	Glycosyl transferase family 1; Derived by automated computational analysis using gene prediction method: Protein Homology. (390 aa)
	AJR24715.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (281 aa)
	AJR25635.1	Glycosyl transferase family protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (325 aa)

Your Current Organism:

Sphingobium sp. YBL2

NCBI taxonomy Id: 484429
Other names: S. sp. YBL2

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR23967.1	AJR24034.1	TZ53_09780	TZ53_10180	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	AsmA family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.516
AJR23967.1	AJR24494.1	TZ53_09780	TZ53_12950	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.541
AJR23967.1	AJR24693.1	TZ53_09780	TZ53_14110	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polysaccharide deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.558
AJR23967.1	AJR24694.1	TZ53_09780	TZ53_14125	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.501
AJR23967.1	AJR24715.1	TZ53_09780	TZ53_14260	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.448
AJR23967.1	AJR26342.1	TZ53_09780	TZ53_11550	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	Heme oxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.636
AJR24034.1	AJR23967.1	TZ53_10180	TZ53_09780	AsmA family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.516
AJR24034.1	AJR24693.1	TZ53_10180	TZ53_14110	AsmA family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polysaccharide deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.517
AJR24034.1	AJR26302.1	TZ53_10180	TZ53_09735	AsmA family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.499
AJR24493.1	AJR24494.1	TZ53_12945	TZ53_12950	Polysaccharide biosynthesis protein GtrA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.640
AJR24494.1	AJR23967.1	TZ53_12950	TZ53_09780	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.541
AJR24494.1	AJR24493.1	TZ53_12950	TZ53_12945	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polysaccharide biosynthesis protein GtrA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.640
AJR24494.1	AJR24693.1	TZ53_12950	TZ53_14110	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polysaccharide deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.417
AJR24494.1	AJR24694.1	TZ53_12950	TZ53_14125	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.444
AJR24494.1	AJR25635.1	TZ53_12950	TZ53_19730	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycosyl transferase family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.535
AJR24494.1	AJR26302.1	TZ53_12950	TZ53_09735	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.417
AJR24494.1	AJR26342.1	TZ53_12950	TZ53_11550	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Heme oxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.430
AJR24693.1	AJR23967.1	TZ53_14110	TZ53_09780	Polysaccharide deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.558
AJR24693.1	AJR24034.1	TZ53_14110	TZ53_10180	Polysaccharide deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	AsmA family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.517
AJR24693.1	AJR24494.1	TZ53_14110	TZ53_12950	Polysaccharide deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.417