(17 nodes) Glycoside hydrolase, family 43, and L-arabinose metabolic process network (Sphingobium sp. YBL2)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AJR22409.1	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 43 family. (341 aa)
	AJR22410.1	Arabinofuranosidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 43 family. (473 aa)
	AJR26237.1	Beta-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (544 aa)
	AJR23521.1	Alpha-glucuronidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 67 family. (710 aa)
	AJR23946.1	Esterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (323 aa)
	AJR23947.1	alpha-N-arabinofuranosidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (522 aa)
	AJR23949.1	alpha-N-arabinofuranosidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 43 family. (376 aa)
	AJR23953.1	9-O-acetylesterase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 2 family. (653 aa)
	AJR23954.1	Alpha-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (635 aa)
	AJR23955.1	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (777 aa)
	AJR23956.1	Glycosyl hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 43 family. (519 aa)
	AJR26300.1	Xylan 1,4-beta-xylosidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 43 family. (541 aa)
	AJR23957.1	Glycoside hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 43 family. (330 aa)
	AJR23960.1	Beta-xylosidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 43 family. (543 aa)
	AJR26372.1	Carbohydrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 43 family. (449 aa)
	AJR24483.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (770 aa)
	AJR24484.1	alpha-N-arabinofuranosidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (534 aa)

Your Current Organism:

Sphingobium sp. YBL2

NCBI taxonomy Id: 484429
Other names: S. sp. YBL2

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR22409.1	AJR22410.1	TZ53_00010	TZ53_00015	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 43 family.	Arabinofuranosidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 43 family.	0.888
AJR22409.1	AJR23521.1	TZ53_00010	TZ53_07050	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 43 family.	Alpha-glucuronidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 67 family.	0.658
AJR22409.1	AJR23946.1	TZ53_00010	TZ53_09640	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 43 family.	Esterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.459
AJR22409.1	AJR23947.1	TZ53_00010	TZ53_09645	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 43 family.	alpha-N-arabinofuranosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.770
AJR22409.1	AJR23949.1	TZ53_00010	TZ53_09655	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 43 family.	alpha-N-arabinofuranosidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 43 family.	0.688
AJR22409.1	AJR23954.1	TZ53_00010	TZ53_09690	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 43 family.	Alpha-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.586
AJR22409.1	AJR23955.1	TZ53_00010	TZ53_09695	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 43 family.	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.698
AJR22409.1	AJR23956.1	TZ53_00010	TZ53_09700	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 43 family.	Glycosyl hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 43 family.	0.767
AJR22409.1	AJR23957.1	TZ53_00010	TZ53_09710	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 43 family.	Glycoside hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 43 family.	0.765
AJR22409.1	AJR24483.1	TZ53_00010	TZ53_12885	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 43 family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.781
AJR22409.1	AJR24484.1	TZ53_00010	TZ53_12890	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 43 family.	alpha-N-arabinofuranosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.770
AJR22409.1	AJR26237.1	TZ53_00010	TZ53_07015	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 43 family.	Beta-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.427
AJR22409.1	AJR26300.1	TZ53_00010	TZ53_09705	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 43 family.	Xylan 1,4-beta-xylosidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 43 family.	0.725
AJR22409.1	AJR26372.1	TZ53_00010	TZ53_12880	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 43 family.	Carbohydrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 43 family.	0.764
AJR22410.1	AJR22409.1	TZ53_00015	TZ53_00010	Arabinofuranosidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 43 family.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 43 family.	0.888
AJR22410.1	AJR23947.1	TZ53_00015	TZ53_09645	Arabinofuranosidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 43 family.	alpha-N-arabinofuranosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.770
AJR22410.1	AJR23949.1	TZ53_00015	TZ53_09655	Arabinofuranosidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 43 family.	alpha-N-arabinofuranosidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 43 family.	0.522
AJR22410.1	AJR23956.1	TZ53_00015	TZ53_09700	Arabinofuranosidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 43 family.	Glycosyl hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 43 family.	0.732
AJR22410.1	AJR23957.1	TZ53_00015	TZ53_09710	Arabinofuranosidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 43 family.	Glycoside hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 43 family.	0.745
AJR22410.1	AJR23960.1	TZ53_00015	TZ53_09725	Arabinofuranosidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 43 family.	Beta-xylosidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 43 family.	0.681