(62 nodes) Mixed, incl. Outer membrane efflux protein, and HlyD family secretion protein network (Sphingobium sp. YBL2)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	emrB	Multidrug resistance protein B; Multidrug MFS transporte; with EmrA is involved in resistance to hydrophobic antibiotics such as nalidixic acid; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the major facilitator superfamily. (509 aa)
	AJR22620.1	Derived by automated computational analysis using gene prediction method: Protein Homology. (387 aa)
	AJR22621.1	Multidrug transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (514 aa)
	AJR22622.1	TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (213 aa)
	AJR26145.1	RND transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (457 aa)
	AJR22964.1	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (305 aa)
	AJR22965.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (71 aa)
	AJR22966.1	Fusaric acid resistance protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (686 aa)
	AJR22967.1	MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (149 aa)
	AJR23000.1	Calcium-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1245 aa)
	AJR23001.1	Secretion protein HylD; Derived by automated computational analysis using gene prediction method: Protein Homology. (453 aa)
	AJR23002.1	ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. (562 aa)
	AJR23003.1	Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (388 aa)
	AJR23004.1	Pectate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology. (444 aa)
	AJR23005.1	Sulfotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (334 aa)
	AJR23006.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (441 aa)
	AJR23207.1	Methyltransferase type 11; Derived by automated computational analysis using gene prediction method: Protein Homology. (285 aa)
	AJR23209.1	RND transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (479 aa)
	AJR23210.1	DSBA oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the major facilitator superfamily. (518 aa)
	AJR23211.1	Multidrug ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (383 aa)
	AJR23212.1	MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (143 aa)
	AJR23455.1	RND transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (464 aa)
	AJR23456.1	RND transporter MFP subunit; Derived by automated computational analysis using gene prediction method: Protein Homology. (397 aa)
	AJR23457.1	RND transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. (1064 aa)
	AJR23458.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (73 aa)
	AJR23480.1	Acriflavine resistance protein E; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (376 aa)
	AJR23481.1	Multidrug transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (1047 aa)
	AJR23482.1	Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (458 aa)
	AJR23810.1	Cation transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. (1070 aa)
	AJR23811.1	Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (375 aa)
	AJR23812.1	Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (421 aa)
	AJR26284.1	Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (472 aa)
	AJR23873.1	RND transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (1065 aa)
	AJR23874.1	Secretion protein HylD; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (416 aa)
	AJR23875.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (125 aa)
	AJR23876.1	TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (202 aa)
	AJR24081.1	Transglycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (82 aa)
	AJR24082.1	Secretion protein HylD; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (390 aa)
	AJR24083.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. (1052 aa)
	AJR24722.1	Secretion protein HylD; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (352 aa)
	AJR24723.1	Multidrug transporter AcrB; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. (1034 aa)
	AJR24761.1	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (490 aa)
	AJR24978.1	Multidrug ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (401 aa)
	AJR24979.1	Macrolide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (233 aa)
	AJR26439.1	Secretion protein HlyD; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (518 aa)
	AJR26440.1	RND transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (482 aa)
	AJR26448.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1806 aa)
	AJR26449.1	RND transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (370 aa)
	AJR26450.1	Secretion protein HlyD; Derived by automated computational analysis using gene prediction method: Protein Homology. (378 aa)
	AJR25062.1	Agglutination protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (464 aa)
	AJR25063.1	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (719 aa)
	AJR25064.1	Secretion protein HlyD; Derived by automated computational analysis using gene prediction method: Protein Homology. (424 aa)
	AJR25065.1	Transglutaminase; Derived by automated computational analysis using gene prediction method: Protein Homology. (353 aa)
	AJR25297.1	Copper-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (134 aa)
	AJR25298.1	Cation transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. (1047 aa)
	AJR25299.1	RND transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (495 aa)
	AJR25300.1	Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (410 aa)
	AJR25564.1	ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. (555 aa)
	AJR25565.1	Secretion protein HylD; Derived by automated computational analysis using gene prediction method: Protein Homology. (460 aa)
	AJR25643.1	Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (466 aa)
	AJR25644.1	Multidrug transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (1058 aa)
	AJR25645.1	Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (386 aa)

Your Current Organism:

Sphingobium sp. YBL2

NCBI taxonomy Id: 484429
Other names: S. sp. YBL2

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR22620.1	AJR22621.1	TZ53_01280	TZ53_01285	Derived by automated computational analysis using gene prediction method: Protein Homology.	Multidrug transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.964
AJR22620.1	AJR22622.1	TZ53_01280	TZ53_01290	Derived by automated computational analysis using gene prediction method: Protein Homology.	TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.639
AJR22620.1	AJR22966.1	TZ53_01280	TZ53_03480	Derived by automated computational analysis using gene prediction method: Protein Homology.	Fusaric acid resistance protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.458
AJR22620.1	AJR23209.1	TZ53_01280	TZ53_04950	Derived by automated computational analysis using gene prediction method: Protein Homology.	RND transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.677
AJR22620.1	AJR23210.1	TZ53_01280	TZ53_04955	Derived by automated computational analysis using gene prediction method: Protein Homology.	DSBA oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the major facilitator superfamily.	0.899
AJR22620.1	AJR23455.1	TZ53_01280	TZ53_06665	Derived by automated computational analysis using gene prediction method: Protein Homology.	RND transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.678
AJR22620.1	AJR23456.1	TZ53_01280	TZ53_06670	Derived by automated computational analysis using gene prediction method: Protein Homology.	RND transporter MFP subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.471
AJR22620.1	AJR23480.1	TZ53_01280	TZ53_06795	Derived by automated computational analysis using gene prediction method: Protein Homology.	Acriflavine resistance protein E; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	0.432
AJR22620.1	AJR23482.1	TZ53_01280	TZ53_06805	Derived by automated computational analysis using gene prediction method: Protein Homology.	Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.662
AJR22620.1	AJR23812.1	TZ53_01280	TZ53_08840	Derived by automated computational analysis using gene prediction method: Protein Homology.	Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.570
AJR22620.1	AJR23874.1	TZ53_01280	TZ53_09210	Derived by automated computational analysis using gene prediction method: Protein Homology.	Secretion protein HylD; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	0.433
AJR22620.1	AJR24761.1	TZ53_01280	TZ53_14545	Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.606
AJR22620.1	AJR24978.1	TZ53_01280	TZ53_15835	Derived by automated computational analysis using gene prediction method: Protein Homology.	Multidrug ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.524
AJR22620.1	AJR25062.1	TZ53_01280	TZ53_16350	Derived by automated computational analysis using gene prediction method: Protein Homology.	Agglutination protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.570
AJR22620.1	AJR25300.1	TZ53_01280	TZ53_17780	Derived by automated computational analysis using gene prediction method: Protein Homology.	Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.534
AJR22620.1	AJR25643.1	TZ53_01280	TZ53_19790	Derived by automated computational analysis using gene prediction method: Protein Homology.	Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.660
AJR22620.1	AJR25645.1	TZ53_01280	TZ53_19800	Derived by automated computational analysis using gene prediction method: Protein Homology.	Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	0.414
AJR22620.1	AJR26145.1	TZ53_01280	TZ53_03465	Derived by automated computational analysis using gene prediction method: Protein Homology.	RND transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.704
AJR22620.1	AJR26284.1	TZ53_01280	TZ53_09200	Derived by automated computational analysis using gene prediction method: Protein Homology.	Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.682
AJR22620.1	AJR26440.1	TZ53_01280	TZ53_15850	Derived by automated computational analysis using gene prediction method: Protein Homology.	RND transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.659