(14 nodes) Mixed, incl. Palmitate, and Drug resistance transporter EmrB-like network (Sphingobium sp. YBL2)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	emrB	Multidrug resistance protein B; Multidrug MFS transporte; with EmrA is involved in resistance to hydrophobic antibiotics such as nalidixic acid; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the major facilitator superfamily. (509 aa)
	AJR22620.1	Derived by automated computational analysis using gene prediction method: Protein Homology. (387 aa)
	AJR22621.1	Multidrug transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (514 aa)
	AJR22622.1	TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (213 aa)
	AJR26145.1	RND transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (457 aa)
	AJR22964.1	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (305 aa)
	AJR22965.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (71 aa)
	AJR22966.1	Fusaric acid resistance protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (686 aa)
	AJR22967.1	MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (149 aa)
	AJR23207.1	Methyltransferase type 11; Derived by automated computational analysis using gene prediction method: Protein Homology. (285 aa)
	AJR23209.1	RND transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (479 aa)
	AJR23210.1	DSBA oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the major facilitator superfamily. (518 aa)
	AJR23211.1	Multidrug ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (383 aa)
	AJR23212.1	MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (143 aa)

Your Current Organism:

Sphingobium sp. YBL2

NCBI taxonomy Id: 484429
Other names: S. sp. YBL2

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR22620.1	AJR22621.1	TZ53_01280	TZ53_01285	Derived by automated computational analysis using gene prediction method: Protein Homology.	Multidrug transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.964
AJR22620.1	AJR22622.1	TZ53_01280	TZ53_01290	Derived by automated computational analysis using gene prediction method: Protein Homology.	TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.639
AJR22620.1	AJR22966.1	TZ53_01280	TZ53_03480	Derived by automated computational analysis using gene prediction method: Protein Homology.	Fusaric acid resistance protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.458
AJR22620.1	AJR23209.1	TZ53_01280	TZ53_04950	Derived by automated computational analysis using gene prediction method: Protein Homology.	RND transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.677
AJR22620.1	AJR23210.1	TZ53_01280	TZ53_04955	Derived by automated computational analysis using gene prediction method: Protein Homology.	DSBA oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the major facilitator superfamily.	0.899
AJR22620.1	AJR26145.1	TZ53_01280	TZ53_03465	Derived by automated computational analysis using gene prediction method: Protein Homology.	RND transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.704
AJR22620.1	emrB	TZ53_01280	TZ53_01275	Derived by automated computational analysis using gene prediction method: Protein Homology.	Multidrug resistance protein B; Multidrug MFS transporte; with EmrA is involved in resistance to hydrophobic antibiotics such as nalidixic acid; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the major facilitator superfamily.	0.977
AJR22621.1	AJR22620.1	TZ53_01285	TZ53_01280	Multidrug transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Derived by automated computational analysis using gene prediction method: Protein Homology.	0.964
AJR22621.1	AJR22622.1	TZ53_01285	TZ53_01290	Multidrug transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.691
AJR22621.1	AJR22964.1	TZ53_01285	TZ53_03470	Multidrug transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	0.677
AJR22621.1	AJR23211.1	TZ53_01285	TZ53_04960	Multidrug transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Multidrug ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.738
AJR22621.1	emrB	TZ53_01285	TZ53_01275	Multidrug transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Multidrug resistance protein B; Multidrug MFS transporte; with EmrA is involved in resistance to hydrophobic antibiotics such as nalidixic acid; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the major facilitator superfamily.	0.917
AJR22622.1	AJR22620.1	TZ53_01290	TZ53_01280	TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Derived by automated computational analysis using gene prediction method: Protein Homology.	0.639
AJR22622.1	AJR22621.1	TZ53_01290	TZ53_01285	TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Multidrug transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.691
AJR22622.1	emrB	TZ53_01290	TZ53_01275	TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Multidrug resistance protein B; Multidrug MFS transporte; with EmrA is involved in resistance to hydrophobic antibiotics such as nalidixic acid; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the major facilitator superfamily.	0.584
AJR22964.1	AJR22621.1	TZ53_03470	TZ53_01285	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	Multidrug transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.677
AJR22964.1	AJR22965.1	TZ53_03470	TZ53_03475	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.861
AJR22964.1	AJR22966.1	TZ53_03470	TZ53_03480	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	Fusaric acid resistance protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.975
AJR22964.1	AJR22967.1	TZ53_03470	TZ53_03485	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.906
AJR22964.1	AJR23209.1	TZ53_03470	TZ53_04950	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	RND transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.614