(6 nodes) Mixed, incl. Cadherin-like, and Type I protein secretion system complex network (Sphingobium sp. YBL2)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AJR23000.1	Calcium-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1245 aa)
	AJR23001.1	Secretion protein HylD; Derived by automated computational analysis using gene prediction method: Protein Homology. (453 aa)
	AJR23002.1	ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. (562 aa)
	AJR23003.1	Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (388 aa)
	AJR23004.1	Pectate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology. (444 aa)
	AJR23005.1	Sulfotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (334 aa)

Your Current Organism:

Sphingobium sp. YBL2

NCBI taxonomy Id: 484429
Other names: S. sp. YBL2

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR23000.1	AJR23001.1	TZ53_03665	TZ53_03670	Calcium-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Secretion protein HylD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.839
AJR23000.1	AJR23002.1	TZ53_03665	TZ53_03675	Calcium-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.835
AJR23000.1	AJR23003.1	TZ53_03665	TZ53_03680	Calcium-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.511
AJR23000.1	AJR23004.1	TZ53_03665	TZ53_03685	Calcium-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pectate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.523
AJR23000.1	AJR23005.1	TZ53_03665	TZ53_03690	Calcium-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sulfotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.496
AJR23001.1	AJR23000.1	TZ53_03670	TZ53_03665	Secretion protein HylD; Derived by automated computational analysis using gene prediction method: Protein Homology.	Calcium-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.839
AJR23001.1	AJR23002.1	TZ53_03670	TZ53_03675	Secretion protein HylD; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.957
AJR23001.1	AJR23003.1	TZ53_03670	TZ53_03680	Secretion protein HylD; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.775
AJR23001.1	AJR23004.1	TZ53_03670	TZ53_03685	Secretion protein HylD; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pectate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.773
AJR23001.1	AJR23005.1	TZ53_03670	TZ53_03690	Secretion protein HylD; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sulfotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.773
AJR23002.1	AJR23000.1	TZ53_03675	TZ53_03665	ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Calcium-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.835
AJR23002.1	AJR23001.1	TZ53_03675	TZ53_03670	ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Secretion protein HylD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.957
AJR23002.1	AJR23003.1	TZ53_03675	TZ53_03680	ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.776
AJR23002.1	AJR23004.1	TZ53_03675	TZ53_03685	ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pectate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.773
AJR23002.1	AJR23005.1	TZ53_03675	TZ53_03690	ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sulfotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.773
AJR23003.1	AJR23000.1	TZ53_03680	TZ53_03665	Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Calcium-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.511
AJR23003.1	AJR23001.1	TZ53_03680	TZ53_03670	Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Secretion protein HylD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.775
AJR23003.1	AJR23002.1	TZ53_03680	TZ53_03675	Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.776
AJR23003.1	AJR23004.1	TZ53_03680	TZ53_03685	Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pectate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.810
AJR23003.1	AJR23005.1	TZ53_03680	TZ53_03690	Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sulfotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.779