(6 nodes) Glutathione S-transferase, C-terminal-like, and RimK-like ATP-grasp domain network (Sphingobium sp. YBL2)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	gshB	Glutathione synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the prokaryotic GSH synthase family. (325 aa)
	AJR22930.1	Glutathione S-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (223 aa)
	AJR26310.1	Glutathione S-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (235 aa)
	AJR24243.1	Glutathione S-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (214 aa)
	AJR25360.1	Glutathione S-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (210 aa)
	AJR25851.1	Glutathione S-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (209 aa)

Your Current Organism:

Sphingobium sp. YBL2

NCBI taxonomy Id: 484429
Other names: S. sp. YBL2

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR22930.1	AJR24243.1	TZ53_03285	TZ53_11420	Glutathione S-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutathione S-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.913
AJR22930.1	AJR25360.1	TZ53_03285	TZ53_18150	Glutathione S-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutathione S-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.920
AJR22930.1	AJR25851.1	TZ53_03285	TZ53_20990	Glutathione S-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutathione S-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.920
AJR22930.1	AJR26310.1	TZ53_03285	TZ53_10070	Glutathione S-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutathione S-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.900
AJR22930.1	gshB	TZ53_03285	TZ53_01185	Glutathione S-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutathione synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the prokaryotic GSH synthase family.	0.930
AJR24243.1	AJR22930.1	TZ53_11420	TZ53_03285	Glutathione S-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutathione S-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.913
AJR24243.1	AJR25360.1	TZ53_11420	TZ53_18150	Glutathione S-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutathione S-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.936
AJR24243.1	AJR25851.1	TZ53_11420	TZ53_20990	Glutathione S-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutathione S-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.941
AJR24243.1	AJR26310.1	TZ53_11420	TZ53_10070	Glutathione S-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutathione S-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.913
AJR24243.1	gshB	TZ53_11420	TZ53_01185	Glutathione S-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutathione synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the prokaryotic GSH synthase family.	0.921
AJR25360.1	AJR22930.1	TZ53_18150	TZ53_03285	Glutathione S-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutathione S-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.920
AJR25360.1	AJR24243.1	TZ53_18150	TZ53_11420	Glutathione S-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutathione S-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.936
AJR25360.1	AJR25851.1	TZ53_18150	TZ53_20990	Glutathione S-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutathione S-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.931
AJR25360.1	AJR26310.1	TZ53_18150	TZ53_10070	Glutathione S-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutathione S-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.942
AJR25360.1	gshB	TZ53_18150	TZ53_01185	Glutathione S-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutathione synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the prokaryotic GSH synthase family.	0.919
AJR25851.1	AJR22930.1	TZ53_20990	TZ53_03285	Glutathione S-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutathione S-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.920
AJR25851.1	AJR24243.1	TZ53_20990	TZ53_11420	Glutathione S-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutathione S-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.941
AJR25851.1	AJR25360.1	TZ53_20990	TZ53_18150	Glutathione S-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutathione S-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.931
AJR25851.1	AJR26310.1	TZ53_20990	TZ53_10070	Glutathione S-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutathione S-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.911
AJR25851.1	gshB	TZ53_20990	TZ53_01185	Glutathione S-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutathione synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the prokaryotic GSH synthase family.	0.925