(49 nodes) Hydrolase activity, hydrolyzing O-glycosyl compounds network (Sphingobium sp. YBL2)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AJR23519.1	Glycoside hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 3 family. (790 aa)
	AJR23437.1	Malto-oligosyltrehalose trehalohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (569 aa)
	AJR23436.1	Glycogen debranching protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 13 family. (701 aa)
	AJR23434.1	Trehalase; Derived by automated computational analysis using gene prediction method: Protein Homology. (520 aa)
	AJR22873.1	Lytic transglycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (678 aa)
	flgG	Makes up the distal portion of the flagellar basal body rod; Bradyrhizobium has one thick flagellum and several thin flagella; the Bradyrhizobium protein in this cluster is associated with the thick flagella; Derived by automated computational analysis using gene prediction method: Protein Homology. (262 aa)
	AJR22579.1	Beta-hexosaminidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (337 aa)
	AJR22412.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (101 aa)
	AJR22410.1	Arabinofuranosidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 43 family. (473 aa)
	AJR25953.1	Beta-xylosidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (307 aa)
	AJR25931.1	Alpha-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (529 aa)
	AJR25930.1	Alpha-amylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (608 aa)
	AJR26516.1	Beta-glucanase; Derived by automated computational analysis using gene prediction method: Protein Homology. (381 aa)
	AJR25608.1	1,4-beta-xylanase; Derived by automated computational analysis using gene prediction method: Protein Homology. (375 aa)
	AJR25540.1	Lytic murein transglycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (599 aa)
	AJR26477.1	DNA transfer protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1242 aa)
	AJR25175.1	Glycogen debranching protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 13 family. (622 aa)
	AJR24709.1	Amylo-alpha-1,6-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (749 aa)
	AJR24954.1	Glycoside hydrolase family 25; Derived by automated computational analysis using gene prediction method: Protein Homology. (221 aa)
	glgB	Glycogen branching protein; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily. (720 aa)
	AJR23706.1	dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose; Belongs to the dTDP-4-dehydrorhamnose reductase family. (736 aa)
	AJR23642.1	1,4-beta-xylanase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 5 (cellulase A) family. (377 aa)
	AJR23640.1	alpha-N-arabinofuranosidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 43 family. (345 aa)
	AJR23638.1	Glycosyl hydrolase family 43; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 43 family. (356 aa)
	AJR23521.1	Alpha-glucuronidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 67 family. (710 aa)
	AJR23520.1	Glycoside hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (791 aa)
	AJR26237.1	Beta-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (544 aa)
	AJR26053.1	alpha-N-arabinofuranosidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (520 aa)
	AJR22409.1	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 43 family. (341 aa)
	AJR23707.1	1,4-beta-xylanase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 5 (cellulase A) family. (355 aa)
	AJR23722.1	Glycoside hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (525 aa)
	AJR23787.1	Endoglucanase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 8 (cellulase D) family. (340 aa)
	AJR23789.1	Cellulose synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1130 aa)
	AJR26294.1	Glycosyl hydrolase family 5; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 5 (cellulase A) family. (341 aa)
	AJR23947.1	alpha-N-arabinofuranosidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (522 aa)
	AJR23948.1	Glycoside hydrolase family 3; Derived by automated computational analysis using gene prediction method: Protein Homology. (874 aa)
	AJR23949.1	alpha-N-arabinofuranosidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 43 family. (376 aa)
	AJR26299.1	Esterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (353 aa)
	AJR23954.1	Alpha-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (635 aa)
	AJR23956.1	Glycosyl hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 43 family. (519 aa)
	AJR26300.1	Xylan 1,4-beta-xylosidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 43 family. (541 aa)
	AJR23957.1	Glycoside hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 43 family. (330 aa)
	AJR23960.1	Beta-xylosidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 43 family. (543 aa)
	AJR23984.1	Beta-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (755 aa)
	AJR23985.1	1,4-beta-D-glucan glucohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (823 aa)
	AJR26372.1	Carbohydrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 43 family. (449 aa)
	AJR24484.1	alpha-N-arabinofuranosidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (534 aa)
	AJR24523.1	Beta-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (763 aa)
	AJR24593.1	MltA; Derived by automated computational analysis using gene prediction method: Protein Homology. (418 aa)

Your Current Organism:

Sphingobium sp. YBL2

NCBI taxonomy Id: 484429
Other names: S. sp. YBL2

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR22409.1	AJR22410.1	TZ53_00010	TZ53_00015	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 43 family.	Arabinofuranosidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 43 family.	0.888
AJR22409.1	AJR23521.1	TZ53_00010	TZ53_07050	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 43 family.	Alpha-glucuronidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 67 family.	0.658
AJR22409.1	AJR23638.1	TZ53_00010	TZ53_07835	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 43 family.	Glycosyl hydrolase family 43; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 43 family.	0.570
AJR22409.1	AJR23640.1	TZ53_00010	TZ53_07855	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 43 family.	alpha-N-arabinofuranosidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 43 family.	0.789
AJR22409.1	AJR23947.1	TZ53_00010	TZ53_09645	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 43 family.	alpha-N-arabinofuranosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.770
AJR22409.1	AJR23949.1	TZ53_00010	TZ53_09655	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 43 family.	alpha-N-arabinofuranosidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 43 family.	0.688
AJR22409.1	AJR23954.1	TZ53_00010	TZ53_09690	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 43 family.	Alpha-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.586
AJR22409.1	AJR23956.1	TZ53_00010	TZ53_09700	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 43 family.	Glycosyl hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 43 family.	0.767
AJR22409.1	AJR23957.1	TZ53_00010	TZ53_09710	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 43 family.	Glycoside hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 43 family.	0.765
AJR22409.1	AJR24484.1	TZ53_00010	TZ53_12890	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 43 family.	alpha-N-arabinofuranosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.770
AJR22409.1	AJR25608.1	TZ53_00010	TZ53_19580	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 43 family.	1,4-beta-xylanase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.666
AJR22409.1	AJR26053.1	TZ53_00010	TZ53_00005	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 43 family.	alpha-N-arabinofuranosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.770
AJR22409.1	AJR26237.1	TZ53_00010	TZ53_07015	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 43 family.	Beta-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.427
AJR22409.1	AJR26300.1	TZ53_00010	TZ53_09705	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 43 family.	Xylan 1,4-beta-xylosidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 43 family.	0.725
AJR22409.1	AJR26372.1	TZ53_00010	TZ53_12880	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 43 family.	Carbohydrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 43 family.	0.764
AJR22410.1	AJR22409.1	TZ53_00015	TZ53_00010	Arabinofuranosidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 43 family.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 43 family.	0.888
AJR22410.1	AJR22412.1	TZ53_00015	TZ53_00025	Arabinofuranosidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 43 family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.418
AJR22410.1	AJR23638.1	TZ53_00015	TZ53_07835	Arabinofuranosidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 43 family.	Glycosyl hydrolase family 43; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 43 family.	0.606
AJR22410.1	AJR23947.1	TZ53_00015	TZ53_09645	Arabinofuranosidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 43 family.	alpha-N-arabinofuranosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.770
AJR22410.1	AJR23949.1	TZ53_00015	TZ53_09655	Arabinofuranosidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 43 family.	alpha-N-arabinofuranosidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 43 family.	0.522