(8 nodes) Siderophore transport network (Sphingobium sp. YBL2)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AJR23392.1	Ferrisiderophore receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (683 aa)
	AJR24633.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (861 aa)
	AJR22723.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (720 aa)
	AJR23673.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (716 aa)
	AJR23982.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (814 aa)
	AJR23388.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (701 aa)
	AJR25909.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (699 aa)
	AJR25632.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (823 aa)

Your Current Organism:

Sphingobium sp. YBL2

NCBI taxonomy Id: 484429
Other names: S. sp. YBL2

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR22723.1	AJR23982.1	TZ53_01920	TZ53_09880	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.442
AJR22723.1	AJR24633.1	TZ53_01920	TZ53_13750	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.438
AJR22723.1	AJR25632.1	TZ53_01920	TZ53_19715	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.428
AJR23388.1	AJR23673.1	TZ53_06185	TZ53_08050	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.439
AJR23388.1	AJR23982.1	TZ53_06185	TZ53_09880	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.440
AJR23388.1	AJR24633.1	TZ53_06185	TZ53_13750	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.411
AJR23673.1	AJR23388.1	TZ53_08050	TZ53_06185	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.439
AJR23673.1	AJR25909.1	TZ53_08050	TZ53_21340	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.405
AJR23982.1	AJR22723.1	TZ53_09880	TZ53_01920	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.442
AJR23982.1	AJR23388.1	TZ53_09880	TZ53_06185	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.440
AJR23982.1	AJR24633.1	TZ53_09880	TZ53_13750	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.663
AJR23982.1	AJR25909.1	TZ53_09880	TZ53_21340	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.659
AJR24633.1	AJR22723.1	TZ53_13750	TZ53_01920	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.438
AJR24633.1	AJR23388.1	TZ53_13750	TZ53_06185	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.411
AJR24633.1	AJR23982.1	TZ53_13750	TZ53_09880	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.663
AJR25632.1	AJR22723.1	TZ53_19715	TZ53_01920	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.428
AJR25909.1	AJR23673.1	TZ53_21340	TZ53_08050	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.405
AJR25909.1	AJR23982.1	TZ53_21340	TZ53_09880	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.659