(10 nodes) Cell envelope organization network (Sphingobium sp. YBL2)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AJR23024.1	Outer membrane lipoprotein OmlA; Derived by automated computational analysis using gene prediction method: Protein Homology. (189 aa)
	AJR23164.1	Secreted (periplasmic)-like protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (164 aa)
	AJR24289.1	OstA family protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (187 aa)
	AJR24701.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (267 aa)
	lptD	Organic solvent tolerance protein; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family. (754 aa)
	AJR24739.1	Peptidylprolyl isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (461 aa)
	AJR24771.1	Pyrrolo-quinoline quinone; Derived by automated computational analysis using gene prediction method: Protein Homology. (453 aa)
	bamA	Membrane protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. (879 aa)
	AJR24878.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (531 aa)
	bamD	Transporter; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. (261 aa)

Your Current Organism:

Sphingobium sp. YBL2

NCBI taxonomy Id: 484429
Other names: S. sp. YBL2

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR23024.1	AJR23164.1	TZ53_03800	TZ53_04670	Outer membrane lipoprotein OmlA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Secreted (periplasmic)-like protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.672
AJR23024.1	AJR24739.1	TZ53_03800	TZ53_14395	Outer membrane lipoprotein OmlA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidylprolyl isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.647
AJR23024.1	AJR24771.1	TZ53_03800	TZ53_14600	Outer membrane lipoprotein OmlA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pyrrolo-quinoline quinone; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.862
AJR23024.1	AJR24878.1	TZ53_03800	TZ53_15225	Outer membrane lipoprotein OmlA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.504
AJR23024.1	bamA	TZ53_03800	TZ53_14985	Outer membrane lipoprotein OmlA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.	0.908
AJR23024.1	bamD	TZ53_03800	TZ53_15975	Outer membrane lipoprotein OmlA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transporter; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.	0.872
AJR23024.1	lptD	TZ53_03800	TZ53_14390	Outer membrane lipoprotein OmlA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Organic solvent tolerance protein; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family.	0.702
AJR23164.1	AJR23024.1	TZ53_04670	TZ53_03800	Secreted (periplasmic)-like protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Outer membrane lipoprotein OmlA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.672
AJR23164.1	AJR24739.1	TZ53_04670	TZ53_14395	Secreted (periplasmic)-like protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidylprolyl isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.578
AJR23164.1	AJR24771.1	TZ53_04670	TZ53_14600	Secreted (periplasmic)-like protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pyrrolo-quinoline quinone; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.511
AJR23164.1	lptD	TZ53_04670	TZ53_14390	Secreted (periplasmic)-like protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Organic solvent tolerance protein; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family.	0.637
AJR24289.1	bamA	TZ53_11695	TZ53_14985	OstA family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.	0.626
AJR24289.1	lptD	TZ53_11695	TZ53_14390	OstA family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Organic solvent tolerance protein; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family.	0.952
AJR24701.1	AJR24739.1	TZ53_14165	TZ53_14395	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidylprolyl isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.553
AJR24701.1	AJR24771.1	TZ53_14165	TZ53_14600	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pyrrolo-quinoline quinone; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.650
AJR24701.1	AJR24878.1	TZ53_14165	TZ53_15225	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.650
AJR24701.1	bamA	TZ53_14165	TZ53_14985	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.	0.922
AJR24701.1	bamD	TZ53_14165	TZ53_15975	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transporter; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.	0.905
AJR24701.1	lptD	TZ53_14165	TZ53_14390	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Organic solvent tolerance protein; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family.	0.461
AJR24739.1	AJR23024.1	TZ53_14395	TZ53_03800	Peptidylprolyl isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Outer membrane lipoprotein OmlA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.647